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Protein Overview: PIE1_ARATH

General Information:
Name(s) found: PIE1_ARATH [Swiss-Prot]
Description(s) found:
Found 9 descriptions.
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  • Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana GN=PIE1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 2055 amino acids

    Gene Ontology:
    Cellular Component: SWI/SNF complex [ISS]
    cell wall [IDA]
    chromatin remodeling complex [IDA]
    Biological Process: petal development [IGI]
    petal formation [IGI]
    response to cadmium ion [IDA]
    defense response to bacterium [IGI]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA][ISS]
    DNA binding [IEA][ISS]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKGGKSKP DIVMASKSGK SKPDNESRAK RQKTLEAPKE PRRPKTHWDH VLEEMAWLSK  60
   61 DFESERKWKL AQAKKVALRA SKGMLDQASR EERKLKEEEQ RLRKVALNIS KDMKKFWMKV 120
  121 EKLVLYKHQL VRNEKKKKAM DKQLEFLLGQ TERYSTMLAE NLVEPYKQGQ NTPSKPLLTI 180
  181 ESKSDEERAE QIPPEINSSA GLESGSPELD EDYDLKSEDE TEDDEDTIEE DEKHFTKRER 240
  241 QEELEALQNE VDLPVEELLR RYTSGRVSRE TSPVKDENED NLTSVSRVTS PVKDENQDNL 300
  301 ASVGQDHGED KNNLAASEET EGNPSVRRSN DSYGHLAISE THSHDLEPGM TTASVKSRKE 360
  361 DHTYDFNDEQ EDVDFVLANG EEKDDEATLA VEEELAKADN EDHVEEIALL QKESEMPIEV 420
  421 LLARYKEDFG GKDISEDESE SSFAVSEDSI VDSDENRQQA DLDDDNVDLT ECKLDPEPCS 480
  481 ENVEGTFHEV AEDNDKDSSD KIADAAAAAR SAQPTGFTYS TTKVRTKLPF LLKHSLREYQ 540
  541 HIGLDWLVTM YEKKLNGILA DEMGLGKTIM TIALLAHLAC DKGIWGPHLI VVPTSVMLNW 600
  601 ETEFLKWCPA FKILTYFGSA KERKLKRQGW MKLNSFHVCI TTYRLVIQDS KMFKRKKWKY 660
  661 LILDEAHLIK NWKSQRWQTL LNFNSKRRIL LTGTPLQNDL MELWSLMHFL MPHVFQSHQE 720
  721 FKDWFCNPIA GMVEGQEKIN KEVIDRLHNV LRPFLLRRLK RDVEKQLPSK HEHVIFCRLS 780
  781 KRQRNLYEDF IASTETQATL TSGSFFGMIS IIMQLRKVCN HPDLFEGRPI VSSFDMAGID 840
  841 VQLSSTICSL LLESPFSKVD LEALGFLFTH LDFSMTSWEG DEIKAISTPS ELIKQRVNLK 900
  901 DDLEAIPLSP KNRKNLQGTN IFEEIRKAVF EERIQESKDR AAAIAWWNSL RCQRKPTYST 960
  961 SLRTLLTIKG PLDDLKANCS SYMYSSILAD IVLSPIERFQ KMIELVEAFT FAIPAARVPS1020
 1021 PTCWCSKSDS PVFLSPSYKE KVTDLLSPLL SPIRPAIVRR QVYFPDRRLI QFDCGKLQEL1080
 1081 AMLLRKLKFG GHRALIFTQM TKMLDVLEAF INLYGYTYMR LDGSTPPEER QTLMQRFNTN1140
 1141 PKIFLFILST RSGGVGINLV GADTVIFYDS DWNPAMDQQA QDRCHRIGQT REVHIYRLIS1200
 1201 ESTIEENILK KANQKRVLDN LVIQNGEYNT EFFKKLDPME LFSGHKALTT KDEKETSKHC1260
 1261 GADIPLSNAD VEAALKQAED EADYMALKRV EQEEAVDNQE FTEEPVERPE DDELVNEDDI1320
 1321 KADEPADQGL VAAGPAKEEM SLLHSDIRDE RAVITTSSQE DDTDVLDDVK QMAAAAADAG1380
 1381 QAISSFENQL RPIDRYAIRF LELWDPIIVE AAMENEAGFE EKEWELDHIE KYKEEMEAEI1440
 1441 DDGEEPLVYE KWDADFATEA YRQQVEVLAQ HQLMEDLENE AREREAAEVA EMVLTQNESA1500
 1501 HVLKPKKKKK AKKAKYKSLK KGSLAAESKH VKSVVKIEDS TDDDNEEFGY VSSSDSDMVT1560
 1561 PLSRMHMKGK KRDLIVDTDE EKTSKKKAKK HKKSLPNSDI KYKQTSALLD ELEPSKPSDS1620
 1621 MVVDNELKLT NRGKTVGKKF ITSMPIKRVL MIKPEKLKKG NLWSRDCVPS PDSWLPQEDA1680
 1681 ILCAMVHEYG PNWNFVSGTL YGMTAGGAYR GRYRHPAYCC ERYRELIQRH ILSASDSAVN1740
 1741 EKNLNTGSGK ALLKVTEENI RTLLNVAAEQ PDTEMLLQKH FSCLLSSIWR TSTRTGNDQM1800
 1801 LSLNSPIFNR QFMGSVNHTQ DLARKPWQGM KVTSLSRKLL ESALQDSGPS QPDNTISRSR1860
 1861 LQETQPINKL GLELTLEFPR GNDDSLNQFP PMISLSIDGS DSLNYVNEPP GEDVLKGSRV1920
 1921 AAENRYRNAA NACIEDSFGW ASNTFPANDL KSRTGTKAQS LGKHKLSASD SAKSTKSKHR1980
 1981 KLLAEQLEGA WVRPNDPNLK FDFTPGDREE EEEQEVDEKA NSAEIEMISC SQWYDPFFTS2040
 2041 GLDDCSLASD ISEIE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..363] PSI-BLAST 19.39794 Heavy meromyosin subfragment
    2 View Details [364..503] deduced N/A No confident structure predictions are available.
    3 View Details [504..777] PSI-BLAST 88.09691 Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA
    4 View Details [778..993] FFAS03 5.08 Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain
    5 View Details [994..1254] PSI-BLAST 25.69897 Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain
    6 View Details [1255..1327] deduced N/A No confident structure predictions are available.
    7 View Details [1328..1441] PSI-BLAST 7.221849 nucleosome recognition module of ISWI ATPase
    8 View Details [1442..1635] PSI-BLAST 4.69897 No description for 2dfsA was found.
    9 View Details [1636..1663] PSI-BLAST 5.522879 No description for 2i1jA was found.
    10 View Details [1664..1867] FFAS03 2.44 CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES
    11 View Details [1868..2055] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.
    10
    Term Confidence Notes
  • binding
    		•  0.232528774113254 bayes_pls_golite062009
    11 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle