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Protein Overview: gi|24376330, gi|...

General Information:
Name(s) found: gi|24376330 [NCBI NR]
gi|24345232 [NCBI NR]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • gi|24376330|ref|NP_720438.1| outer membrane protein A [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24345232|gb|AAN53038.1| outer membrane protein OmpA [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 342 amino acids

    Gene Ontology:
    Cellular Component: cell outer membrane [ISSLink to PubMed article]
    Biological Process: transport [ISSLink to PubMed article]
    Molecular Function: porin activity [ISSLink to PubMed article]
    receptor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYKLILLTF LPFSFSTLAS EPPSYLPFQS YWYAGAGLGQ GHYSNGSNPQ SYDSVRDRFA  60
   61 GSVYLGYQVN PYLAPELSYQ FLGSAYANYE QGQISGDFQQ VVLAARFGYP LTTSLYPYVK 120
  121 VGGAGWFGDS EGLRSGSERG FSPIVAAGVE YAFTPRLSGR LEHQYTDSLG ADSIGYTDHH 180
  181 LTTLGLSWRF GHSAPVTAPT PEVVTQVVEL PPVVQIVEKR QFVYSEQKGN SLLFAHNSSV 240
  241 LNNTSQFADV VSFLKQHPTA SAVITGHTDS TGSDKYNQWL SERRAISVAN YLVSQGVQSA 300
  301 QLTSVGKGET ASVADNTTEN GRAMNRRVEI TIPEFTVTKT VK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] PSI-BLAST 22.154902 Outer membrane protein A (OMPA) transmembrane domain
    2 View Details [197..342] PSI-BLAST 25.522879 No description for 2hqsH was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • porin activity
    		•  5.10991724700971 bayes_pls_golite062009
  • channel activity
    		•  4.78965126968592 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  4.78965126968592 bayes_pls_golite062009
  • wide pore channel activity
    		•  3.92328965238944 bayes_pls_golite062009
  • transporter activity
    		•  2.94995161862691 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.84443650880263 bayes_pls_golite062009
  • receptor activity
    		•  1.96745124806322 bayes_pls_golite062009
  • signal transducer activity
    		•  1.14131647544827 bayes_pls_golite062009
  • molecular transducer activity
    		•  1.14131647544827 bayes_pls_golite062009
  • binding
    		•  0.881171786743586 bayes_pls_golite062009
  • protein binding
    		•  0.251915221742479 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle