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Protein Overview: FPG_SHEON

General Information:
Name(s) found: FPG_SHEON [Swiss-Prot]
Description(s) found:
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  • gi|24376198|ref|NP_720242.1| formamidopyrimidine-DNA glycosylase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24351249|gb|AAN57685.1|AE015904_8 formamidopyrimidine-DNA glycosylase [Shewanella oneidensis MR-1] [NCBI NR]
  • Formamidopyrimidine-DNA glycosylase OS=Shewanella oneidensis (strain MR-1) GN=mutM PE=3 SV=3 [Swiss-Prot]
  • formamidopyrimidine-DNA glycosylase [Shewanella oneidensis MR-1]gi|24351249|gb|AAN57685.1| formamidopyrimidine-DNA glycosylase [Shewanella oneidensis MR-1]gi|29611714|sp|Q8E8D9|FPG_SHEON Formamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) [nrdb_11152004_Chlamydomonas]
  • formamidopyrimidine-DNA glycosylase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 271 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: oxidized purine base lesion DNA N-glycosylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELPEVEVT RQGITPYLVD QTVVDLIVRN PSLRWPVPEL AKQIIGQTIR QVRRRAKYLL  60
   61 IDTDAGTSIV HLGMSGSLRI LPHDTPVEKH DHIDLVLANG RILRFNDPRR FGAWLWCQLP 120
  121 EEAHPLLEKL GPEPLTDAFN VNQLAASLAG KKKAIKLCLM DNHIVVGVGN IYANEALFAA 180
  181 GIHPEAEAGK IDIERLTVLV AEVKQILAHA IKQGGTTLKD FTNADGKPGY FAQKLHVYGR 240
  241 GGETCTQCGN LLSEIRLGQR TTVFCSICQP R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..271] PSI-BLAST 105.0 DNA repair protein MutM (Fpg)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  2.37911289746472 bayes_pls_golite062009
  • structural molecule activity
    		•  2.10984179872151 bayes_pls_golite062009
  • binding
    		•  1.7313696856499 bayes_pls_golite062009
  • DNA binding
    		•  1.22619720972604 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.17199530230795 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.16376707327858 bayes_pls_golite062009
  • protein binding
    		•  1.14219782236887 bayes_pls_golite062009
  • transcription factor activity
    		•  0.472763834470731 bayes_pls_golite062009
  • catalytic activity
    		•  0.161830442565647 bayes_pls_golite062009
  • lyase activity
    		•  0.0836281676510939 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle