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Protein Overview: gi|24351127, gi|...

General Information:
Name(s) found: gi|24376098 [NCBI NR]
gi|24351127 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24376098|ref|NP_720141.1| competence protein ComF [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24351127|gb|AAN57585.1|AE015894_5 competence protein ComF [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 235 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: establishment of competence for transformation [ISSLink to PubMed article]
    Molecular Function: competence pheromone activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSLPNRCL LCHQSLNSTE AGFCHVCLHS GLYHSPICLG CGKSMQLELE YCGECQKHQP  60
   61 RKVIAPCSYH QGFGPWIAAI KYQGQFAALP ILCHALVERL SLLEQQGLIT LPQAIVPVPL 120
  121 HANRLRQRGF NQAWLIAHEL SQRLQLPLVD QGLTRRQDTR PQAGLNGVQR RRNLQDAFEL 180
  181 NVDFAYQRIA LVDDVVTTGT TVAEIARLFE ARYVHVQIWC LARAEAPGLL EITDL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..235] PSI-BLAST 31.045757 Glutamine PRPP amidotransferase, C-terminal domain; Glutamine PRPP amidotransferase, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  2.13215401486422 bayes_pls_golite062009
  • transferase activity
    		•  2.01480567121657 bayes_pls_golite062009
  • diphosphotransferase activity
    		•  1.2980439591794 bayes_pls_golite062009
  • transferase activity, transferring pentosyl groups
    		•  0.899227917236164 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  0.782718700399924 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.66

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle