YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351127, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351127, gi|....

Description	E-value	Query Range	Subject Range
gi\|114049365, gi... - gi\|78689255\|ref\|ZP_00853919.1\| competence protein ComF [Shewanella sp. MR-7], gi\|78511412\|gb\|EAP2477...	171.0	[0..5]	[235..32]
gi\|78684464, gi\|... - gi\|78684464\|ref\|ZP_00849248.1\| competence protein ComF [Shewanella sp. ANA-3], gi\|78507796\|gb\|EAP213...	170.0	[0..5]	[231..32]
gi\|82496227, gi\|... - gi\|82496227\|ref\|ZP_00881797.1\| competence protein ComF [Shewanella sp. MR-4], gi\|82405801\|gb\|EAP4647...	169.0	[0..5]	[235..32]
gi\|37524220, gi\|... - gi\|37524220\|ref\|NP_927564.1\| gluconate periplasmic binding protein [Photorhabdus luminescens subsp. ...	160.0	[0..9]	[224..8]
gi\|20806995, gi\|... - gi\|20806995\|ref\|NP_622166.1\| amidophosphoribosyltransferase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806995 - gi\|20806995\|ref\|NP_622166.1\| predicted amidophosphoribosyltransferase [Thermoanaerobacter tengcongen... gi\|214035204, gi... - gi\|254478842\|ref\|ZP_05092207.1\| Phosphoribosyl transferase domain protein [Carboxydibrachium pacific...	157.0	[0..1]	[224..4]
gi\|124508767, gi... - gi\|124548068\|ref\|ZP_01706850.1\| competence protein ComF [Shewanella putrefaciens 200], gi\|124508767\|... gi\|146294882, gi... - gi\|77813786\|ref\|ZP_00813059.1\| competence protein ComF [Shewanella putrefaciens CN-32], gi\|77811292\|...	157.0	[0..5]	[235..32]
gi\|125995600, gi... - gi\|68542520\|ref\|ZP_00582249.1\| competence protein ComF [Shewanella baltica OS155], gi\|68519801\|gb\|EA...	156.0	[0..5]	[235..32]
gi\|82712851, gi\|... - gi\|82740072\|ref\|ZP_00902838.1\| competence protein ComF, putative [Pseudomonas putida F1], gi\|8271285...	155.0	[0..7]	[228..19]
gi\|120596946, gi... - gi\|82741193\|ref\|ZP_00903920.1\| competence protein ComF [Shewanella sp. W3-18-1], gi\|82721462\|gb\|EAP5...	155.0	[0..5]	[235..32]
gi\|24981731, gi\|... - gi\|26987103\|ref\|NP_742528.1\| competence protein ComF, putative [Pseudomonas putida KT2440], gi\|24981...	154.0	[0..9]	[228..21]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSLPNRCL LCHQSLNSTE AGFCHVCLHS GLYHSPICLG CGKSMQLELE YCGECQKHQP  60
   61 RKVIAPCSYH QGFGPWIAAI KYQGQFAALP ILCHALVERL SLLEQQGLIT LPQAIVPVPL 120
  121 HANRLRQRGF NQAWLIAHEL SQRLQLPLVD QGLTRRQDTR PQAGLNGVQR RRNLQDAFEL 180
  181 NVDFAYQRIA LVDDVVTTGT TVAEIARLFE ARYVHVQIWC LARAEAPGLL EITDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.045757
Match:	1gph1
Description:	Glutamine PRPP amidotransferase, C-terminal domain; Glutamine PRPP amidotransferase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.13215401486422	bayes_pls_golite062009
transferase activity	2.01480567121657	bayes_pls_golite062009
diphosphotransferase activity	1.2980439591794	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	0.899227917236164	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.782718700399924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: