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Protein Overview: gi|24351115, gi|...

General Information:
Name(s) found: gi|24376089 [NCBI NR]
gi|24351115 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24376089|ref|NP_720132.1| polysaccharide deacetylase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24351115|gb|AAN57576.1|AE015893_5 polysaccharide deacetylase family protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 348 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: polysaccharide metabolic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRALLALI GLMTFSANAV VILQYHHVSQ TTPAATSVTP AQFREQMQFL ADDGFKVVSL  60
   61 SQVVEAIKNK QDLPAKTVAI TFDDGYRSIA TTAHPILKEF GFPYTLFVAI EPIKQKFTEM 120
  121 MTWEELIQLS KEGADIANHS WAHEHLIRRL DNESQIQWLP RIKANILATE NAIREATGQN 180
  181 FNMLAYPYGE YNQAVQDMLT ENGFVAFGQQ SGAAGPYSPL TALPRFPVAG QYADLKSLKA 240
  241 KLYSLNMPVL AQTPSDPELK GGQWRPELKI KLDMSDISAK QLMCYIQGQG AKAPTWLSEN 300
  301 EFSIQADLAL PAGRSRYNCT APSKTHNGFY WFSQPWVRPK DDGTWIKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..348] PSI-BLAST 42.221849 Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.54926008475976 bayes_pls_golite062009
  • deacetylase activity
    		•  1.07373873416936 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.04159714419468 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  0.78725677170464 bayes_pls_golite062009
  • hydrolase activity
    		•  0.7139390771237 bayes_pls_golite062009
  • mannosidase activity
    		•  0.32530435999467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle