YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351115, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351115, gi|....

Description	E-value	Query Range	Subject Range
gi\|113972128, gi... - gi\|82496231\|ref\|ZP_00881801.1\| polysaccharide deacetylase family protein [Shewanella sp. MR-4], gi\|8...	308.0	[0..1]	[348..1]
gi\|113890800, gi... - gi\|78689251\|ref\|ZP_00853915.1\| polysaccharide deacetylase family protein [Shewanella sp. MR-7], gi\|7...	307.0	[0..1]	[348..1]
gi\|78507786, gi\|... - gi\|78684454\|ref\|ZP_00849238.1\| polysaccharide deacetylase family protein [Shewanella sp. ANA-3], gi\|...	306.0	[0..1]	[348..1]
gi\|82721452, gi\|... - gi\|82741183\|ref\|ZP_00903910.1\| polysaccharide deacetylase family protein [Shewanella sp. W3-18-1], g...	302.0	[0..1]	[348..43]
gi\|68519797, gi\|... - gi\|68542516\|ref\|ZP_00582245.1\| Polysaccharide deacetylase [Shewanella baltica OS155], gi\|68519797\|gb...	301.0	[0..1]	[348..1]
gi\|77813795, gi\|... - gi\|77813795\|ref\|ZP_00813068.1\| Polysaccharide deacetylase [Shewanella putrefaciens CN-32], gi\|778113...	300.0	[0..1]	[348..43]
gi\|160877423, gi... - gi\|160877423\|ref\|YP_001556739.1\| polysaccharide deacetylase [Shewanella baltica OS195], gi\|160862945...	298.0	[0..1]	[348..1]
gi\|90020300, gi\|... - gi\|90020300\|ref\|YP_526127.1\| regulatory protein, LacI [Saccharophagus degradans 2-40], gi\|89949900\|g...	269.0	[0..4]	[348..13]
gi\|114561436, gi... - gi\|69950034\|ref\|ZP_00637966.1\| Polysaccharide deacetylase [Shewanella frigidimarina NCIMB 400], gi\|6...	260.0	[0..2]	[348..7]
gi\|78366768, gi\|... - gi\|78366768\|ref\|ZP_00837045.1\| Polysaccharide deacetylase [Shewanella sp. PV-4], gi\|78361122\|gb\|EAP0...	253.0	[0..3]	[348..37]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRALLALI GLMTFSANAV VILQYHHVSQ TTPAATSVTP AQFREQMQFL ADDGFKVVSL  60
   61 SQVVEAIKNK QDLPAKTVAI TFDDGYRSIA TTAHPILKEF GFPYTLFVAI EPIKQKFTEM 120
  121 MTWEELIQLS KEGADIANHS WAHEHLIRRL DNESQIQWLP RIKANILATE NAIREATGQN 180
  181 FNMLAYPYGE YNQAVQDMLT ENGFVAFGQQ SGAAGPYSPL TALPRFPVAG QYADLKSLKA 240
  241 KLYSLNMPVL AQTPSDPELK GGQWRPELKI KLDMSDISAK QLMCYIQGQG AKAPTWLSEN 300
  301 EFSIQADLAL PAGRSRYNCT APSKTHNGFY WFSQPWVRPK DDGTWIKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: