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Protein Overview: gi|24350797, gi|...

General Information:
Name(s) found: gi|24375838 [NCBI NR]
gi|24350797 [NCBI NR]
Description(s) found:
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  • gi|24375838|ref|NP_719881.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350797|gb|AAN57325.1|AE015869_1 anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella oneidensis MR-1]gi|24350797|gb|AAN57325.1| anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • anaerobic dimethyl sulfoxide reductase, B subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 205 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: anaerobic respiration [ISSLink to PubMed article]
    Molecular Function: electron carrier activity [ISSLink to PubMed article]
    dimethyl sulfoxide reductase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEPTQYGFY VDTTKCSGCK TCQVACKDRS DIEVGKQWRR TYEYCGGNWT ADGQGAYHQD  60
   61 VFAYYISISC NHCSNPVCVK ACPTGAMYKE RSTGLVKVNQ DLCIGCESCA RACPYDAPQI 120
  121 DPQRKVMTKC DGCSDRVAKG LKPSCVMSCP QRALDFGLIA ELKQQYGNDS DISGLPSSSI 180
  181 THPNLVLKVH AKSGQRGEII NITEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..205] PSI-BLAST 31.69897 Formate dehydrogenase N, iron-sulfur (beta) subunit; Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • formate dehydrogenase activity
    		•  10.9674358961972 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  7.27554333181693 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  6.49651154487804 bayes_pls_golite062009
  • metal cluster binding
    		•  6.49651154487804 bayes_pls_golite062009
  • oxidoreductase activity
    		•  5.98361135786786 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  5.77927347135001 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  5.39747453448396 bayes_pls_golite062009
  • electron carrier activity
    		•  5.05393703018095 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  3.13953145151561 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  2.76338281383262 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  2.70037803782769 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  2.09041948600744 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  1.80621486978907 bayes_pls_golite062009
  • catalytic activity
    		•  0.488483980994331 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle