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Protein Overview: gi|24350752, gi|...

General Information:
Name(s) found: gi|24375802 [NCBI NR]
gi|24350752 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24375802|ref|NP_719845.1| agglutination protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350752|gb|AAN57289.1|AE015865_3 agglutination protein [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 471 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pathogenesis [ISSLink to PubMed article]
    Molecular Function: binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVRRQFQ CSKIAVLLSA ILLPLSAQSQ TLEQAVAHTL DTNPDLRVAF NRFKAREEQV  60
   61 NQAIAGYMPT VDLTGGYGYE QTDSVSTRRR KNVGDVDSNG VAELNRGEFG ISLKQMLFDG 120
  121 FYTSSEVDRY SFEASADQWA LLAAAEDMAL DVSKAYLNYL RTDEVLKLAE KNLNSHKEIY 180
  181 DQIKQRTDSG LGSTADLSQI SGRLARANAN VISARNNLLD AKAQFVRVVA ADPVDLIQPV 240
  241 PDADMLPKDL NSSIADAEKN HPILKSAAND IRAAENERSS TQANYYPQVS LELNGSWNND 300
  301 VGGEDGVSAI ASQNVGGYSN DIVAMVRVKY NLFAGGKDLA REKESAYKLS EAKEIRQRAQ 360
  361 REVVEGVNLA WNAYEMLAPQ KQYIRDHVIA AKDTQSAYAQ QFNLGQRSLL DLLDTENELF 420
  421 EARKDYLQAE YDETIAKYRV LNSTGRLLDS LKVTRPEAWR GERNYEGGAN Q

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..471] PSI-BLAST 64.39794 Crystal structure of the drug-discharge outer membrane protein, OprM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.2806100513341 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.91628575119399 bayes_pls_golite062009
  • porin activity
    		•  0.960340223825989 bayes_pls_golite062009
  • protein binding
    		•  0.733559018445359 bayes_pls_golite062009
  • binding
    		•  0.666039242029224 bayes_pls_golite062009
  • drug transmembrane transporter activity
    		•  0.40205797321583 bayes_pls_golite062009
  • efflux transmembrane transporter activity
    		•  0.381147202210091 bayes_pls_golite062009
    		• 0.32815814791941 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle