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Protein Overview: DAPF_SHEON

General Information:
Name(s) found: DAPF_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Diaminopimelate epimerase OS=Shewanella oneidensis (strain MR-1) GN=dapF PE=1 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 275 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lysine biosynthetic process via diaminopimelate [ISSLink to PubMed article]
    Molecular Function: diaminopimelate epimerase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQFTKMHGL GNDFMVVDGI TQNVFFSPEQ IRRLADRNFG VGFDQLLLVE PPYDPDLDFH  60
   61 YRIFNADGGE VENCGNGARC FARFVRNKGL TNKNKIRVST SAGKMTLRLE RDGTVTVNMG 120
  121 VPVLEPSQIP FKAKKAEKTY LLQTPQQTFL CGAASMGNPH CVLDVEDVAN ANVAEIGALL 180
  181 TKHERFPRGV NVGFMQVVNA GHIKLRVYER GAAETLACGT GACAAVVVGQ IQGKLDQQVQ 240
  241 VDLPGGSLTI NWEGEGKPLW MTGPAQHVYD GQIQL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..275] PSI-BLAST 86.154902 Diaminopimelate epimerase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • diaminopimelate epimerase activity
    		•  4.22926504608084 bayes_pls_golite062009
  • amino-acid racemase activity
    		•  3.36270508746492 bayes_pls_golite062009
  • racemase and epimerase activity, acting on amino acids and derivatives
    		•  3.23874676534548 bayes_pls_golite062009
  • catalytic activity
    		•  1.37892559560737 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  0.0469151339756061 bayes_pls_golite062009
  • isomerase activity
    		•  0.0304048110491 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle