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Protein Overview: gi|24350574, gi|...

General Information:
Name(s) found: gi|24375660 [NCBI NR]
gi|24350574 [NCBI NR]
Description(s) found:
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  • gi|24375660|ref|NP_719703.1| NAD dependent epimerase/dehydratase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350574|gb|AAN57147.1|AE015849_14 NAD dependent epimerase/dehydratase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • NAD dependent epimerase/dehydratase family protein [Shewanella oneidensis MR-1]gi|24350574|gb|AAN57147.1| NAD dependent epimerase/dehydratase family protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • NAD dependent epimerase/dehydratase family protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: O antigen biosynthetic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANIMVTGAT GLLGRAVVKQ LTAAGHRVIA TGFSCAEANI HKLDLTQAIA VEAFIARERP  60
   61 EVIVHCAAER RPDVSEQSPE QALALNLSAS QTLAKAAKQH GAWLLYISTD YVFDGTTPPY 120
  121 AEDAAPNPVN FYGESKLQGE TCVLNTDSRF AVLRLPILYG EVTQLSESAV LVLINQLLDS 180
  181 RPQRVDAWAI RSPTSTADIA GAIAKLIKRQ LHAADVLGIY HFSSPQTMTK YQMLLSLGEL 240
  241 LAIDTAHLTP ELTPMDSAKR PQNCTLSCGR LAALGIYSEL EFSAGLNQAL AQSSAALAAV 300
  301 GLKLKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..306] PSI-BLAST 40.522879 Crystal structure of DTDP-4-dehydrorhamnose reductase, rfbD ortholog (CAC2315) from Clostridium acetobutylicum at 2.05 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methionine adenosyltransferase regulator activity
    		•  5.88466784940665 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.9367410227151 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.868888700854563 bayes_pls_golite062009
  • DNA binding
    		•  0.790382977752475 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.613310508772122 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  0.418775403210681 bayes_pls_golite062009
  • binding
    		•  0.390159270709819 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.32207755075663 bayes_pls_golite062009
  • transcription factor activity
    		•  0.11102650759187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.51

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle