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Protein Overview: gi|24350457, gi|...

General Information:
Name(s) found: gi|24375572 [NCBI NR]
gi|24350457 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24375572|ref|NP_719615.1| chitinase A [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350457|gb|AAN57059.1|AE015839_8 chitinase A [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 699 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: chitin catabolic process [ISSLink to PubMed article]
    Molecular Function: chitinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNPQAGVVV GYWHNWCGGA GYKGGVAPCV SLAQVNPQYN VVDISFMKVY GATGSIPTFK  60
   61 LDPAVGLSEA QFIDQIGELN RQGRAVLIAL GGADAHIELR KGQEHDLANE IIRLVEKYGF 120
  121 DGLDIDLEQA AVTAADNQIV IPAALRIVKD HYRKQQKNFL ITMAPEFPYL TTGGKYVPYI 180
  181 NALEGYYDWI NPQFYNQGGD GIYIEGIGWI AQNNDSLKQE FIYHISDALV NGTNGFTKIP 240
  241 HDKLVFGIPT NIDAAATGYV SDPNALFAAF EQLKNQGQPL RGLMTWSVNW DMGKNAAGQA 300
  301 YNESFIKAYG PFIHGQDITP PEPENGKPIF SGLSNTRVKL GGTFNAMDGV SAYDEEDKDL 360
  361 TQQIQVTGDV NTNQIGLYPL TYKVTDSDNN TTEQVRTVEV YNTKPELSGV SNTTIILATP 420
  421 FDAMAGVSAT DAEDGNLTPN IRVEGEVDSN RVGQYQLTYS VSDSAGEQTR AVRLVTVQEQ 480
  481 GAVCENLWSA SKIYLGGDTV NYAGKIWLAG WWTQGEQPDL AGEWGVWKSK GDSDCDSGLP 540
  541 PVITPNFTVS GLASSYILNQ GQVSINFNVN TNQAMELTAN LTQEQRILAS TTATINGNGA 600
  601 MVLQAESLEA GAYQVVISAK DKNLTQSYNV SLVQGDDGSE PVEYPAYVAG NQYQAGNIVT 660
  661 NAGGVYQCRP WPNSGWCSGS APYYAPGTGS AWQDAWTKH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..418] PSI-BLAST 57.522879 Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase
    2 View Details [419..635] PSI-BLAST 5.522879 Surface layer protein
    3 View Details [636..699] FFAS03 0.954 No description for 2d49A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chitinase activity
    		•  4.63053093657993 bayes_pls_golite062009
  • catalytic activity
    		•  0.904956784158091 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  0.78623686340888 bayes_pls_golite062009
  • glucosidase activity
    		•  0.58717079348538 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  0.54690583049799 bayes_pls_golite062009
  • amylase activity
    		•  0.0914002140078796 bayes_pls_golite062009
  • hydrolase activity
    		•  0.06868321459924 bayes_pls_golite062009
  • alpha-amylase activity
    		•  0.0521244165288097 bayes_pls_golite062009
  • binding
    		•  0.0211752443510049 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.263982339577965 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle