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Protein Overview: RIMO_SHEON

General Information:
Name(s) found: RIMO_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Ribosomal protein S12 methylthiotransferase RimO OS=Shewanella oneidensis (strain MR-1) GN=rimO PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 481 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA modification [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVETFHPKQ TTTLETPAKT LEAASADSVN TGNVATGNRI GFVSLGCPKN LVDSERILTQ  60
   61 LRIDGYEVTN SYDNADLVIV NTCGFIDAAV EESLDAVREA LEENGKVIVT GCLGAKENQI 120
  121 REVHPDVLEI TGPHSYEAVL KHVHKYVPKP EHNPFTSLIP QTGVKLTPKH YAYLKISEGC 180
  181 DNRCTFCIIP ALRGDLDSRG AGSVLDEAKR LVEAGVQEIL VVSQDTSAYG KDKGGRTDFW 240
  241 NGMPVKQDIT SLARQLGKMG AWVRLHYIYP YPWVDDLIPL MAEGLILPYL DIPMQHASPR 300
  301 ILKMMKRPGR VDRQLEAIQR WREICPDLVI RSTFIVGFPG ETEEDFEMLL DFLREARLDR 360
  361 VGCFKYSEVE GAVANTIAEL ISEEVKEDRY HRFMEVQAEI SAERLARFVG RTMDILIDDV 420
  421 DEEGAIGRSF ADAPEIDGMV FINGETELEP GMLVRAVITH SDEHDLWAEL VDADAEDEVE 480
  481 A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..168] FFAS03 0.959 Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
    2 View Details [169..481] PSI-BLAST 55.69897 No description for 2qgqA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.31391544670091 bayes_pls_golite062009
  • NADH dehydrogenase activity
    		•  1.12687320369727 bayes_pls_golite062009
  • NADH dehydrogenase (quinone) activity
    		•  0.961709183630333 bayes_pls_golite062009
  • binding
    		•  0.880117216098541 bayes_pls_golite062009
  • NADH dehydrogenase (ubiquinone) activity
    		•  0.848226595871555 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  0.793846453693773 bayes_pls_golite062009
  • protein binding
    		•  0.0998292353431207 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle