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Protein Overview: gi|24350367, gi|...

General Information:
Name(s) found: gi|24375504 [NCBI NR]
gi|24350367 [NCBI NR]
Description(s) found:
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  • gi|24375504|ref|NP_719547.1| Slt family transglycosylase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350367|gb|AAN56991.1|AE015832_7 transglycosylase, Slt family [Shewanella oneidensis MR-1] [NCBI NR]
  • transglycosylase, Slt family [Shewanella oneidensis MR-1]gi|24350367|gb|AAN56991.1| transglycosylase, Slt family [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • transglycosylase, Slt family [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 477 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan catabolic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKTFRQPHA LAAMVIAMLM AQLSGCATTS AQTSPTEFGA GLPEAEDHSE SAEPQSVEAE  60
   61 VIDERYADVW EKIQHARTID VHDDAEVRKQ RNFFDDKQKF MTQVTQRAEP FLYYIVSQLE 120
  121 ARNMPLELAL LPIVESGYNP LAQANGPAGL WQMIPATGRN FGLTINSAYD GRKDALASTD 180
  181 AVLDYLQHLY NTLGNDWINA VAGYNSGELV IKAAIDRNKA KGKPTDFWSL NIPARQVQTV 240
  241 PKWLAFIQII REPSHYNLKV MPIANRPFLE RLPAPNGVEI SQIANAAGLT KAEFKTYNPG 300
  301 YRQSVIPSKG KYQIALPIEN IGHYQENQHK LYAQKRYDSQ TYIVKSGDSL GTIAAKFDLS 360
  361 VKELKQANNL TSDRLKIGQE LTLLTPMAAN DNEPEPVKTK ANTDKSSTKA NASSTKATSS 420
  421 KSTDKPVAKA KTYKVKSGDS LDKIARKSKV KLADLMKWNQ LNAKSIIKPG QELKISE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..265] PSI-BLAST 25.09691 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
    2 View Details [266..399] deduced N/A No confident structure predictions are available.
    3 View Details [400..477] FFAS03 3.26 No description for 2djpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • penicillin binding
    		•  2.64957480679626 bayes_pls_golite062009
  • catalytic activity
    		•  1.95328415115451 bayes_pls_golite062009
  • lysozyme activity
    		•  1.83799209924951 bayes_pls_golite062009
  • drug binding
    		•  1.54697929389118 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  1.16054683174437 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.07226857049823 bayes_pls_golite062009
  • hydrolase activity
    		•  0.677491712259 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  0.45061419828567 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle