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Protein Overview: gi|24375448, gi|...

General Information:
Name(s) found: gi|24375448 [NCBI NR]
gi|24350296 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24375448|ref|NP_719491.1| RNA polymerase factor sigma-54 [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24350296|gb|AAN56935.1|AE015827_7 RNA polymerase sigma-54 factor [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 491 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [ISSLink to PubMed article]
    transcription initiation [ISSLink to PubMed article]
    Molecular Function: sigma factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE EEQFDAPSER  60
   61 KQDLADTDFS ETSAQPQEQD NSTVDIAESL TKESLPEELP MDTTWDEVFT ASPNSGSGAS 120
  121 REDDMPFQGE TSEGLYEHLE WQKNLTPFSE TDLAIATAII DAIDDQGYLT QSTEDILEAM 180
  181 GNPEIELDEV EAVLKRIQHF DPVGVAARDL SECLLIQLSH FSPDTPHLEN ARMLIKDHLD 240
  241 LIAARDFRLL MRKTKLKEDE LRDSIALIQT LNPRPGLLIT AVDEEYVVPD VSVSKKNGRW 300
  301 VVELNPDCMP KINVNQQYAA MARSSKNQAD SQFIRGHLQE AKWFIKSLES RNETLLKVAN 360
  361 CIVQYQQGFF EYGEEAMKPM VLNDIAEAVE MHESTISRVT TQKYMHTPKG LFELKYFFSS 420
  421 HVGTDDGGEC SSTAIRAFIK KLVAAENQKK PLSDSKMAQL LAEQGINVAR RTIAKYREAM 480
  481 LIPPSNQRKS L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] MSA 1.158973 View MSA. No confident structure predictions are available.
    2 View Details [120..324] Pfam 110.173925 No description for PF04963.4 was found. No confident structure predictions are available.
    3 View Details [325..423] Pfam 12.356547 No description for PF04552.4 was found. No confident structure predictions are available.
    4 View Details [424..491] PSI-BLAST 21.0 Solution Structure of the C-terminal RpoN Domain of Sigma-54 from Aquifex aeolicus


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle