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Protein Overview: RLMB_SHEON

General Information:
Name(s) found: RLMB_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Shewanella oneidensis (strain MR-1) GN=rlmB PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 246 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA methylation [ISSLink to PubMed article]
    Molecular Function: RNA methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQDIIFGI HAVEALLKHS PERIIELWLL QGREDERLTP LIRQAKAFGT SIQVTSRKVL  60
   61 DEKAESTQHQ GIVARVKAAK ILAEHDLDEL LAKTDLPFLL ILDGVTDPHN LGACLRNADA 120
  121 AGVQGIIVPK DNSVGLTAVV SKVACGAAET VPLFQVTNLA RTMRHLQEKG VWIVGTAGEA 180
  181 DCELYQADLK GPLAIAMGAE GKGLRRLSRE CCDTLVSIPM SGSVSSLNVS VATGICLFEA 240
  241 VRQRRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] PSI-BLAST 68.69897 RlmB, C-terminal domain; RlmB, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA methyltransferase activity
    		•  4.77771076540343 bayes_pls_golite062009
  • methyltransferase activity
    		•  4.0901595540349 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.01958090893547 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  3.659149846946 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.59156540645412 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  2.52700462137917 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  2.29844424181442 bayes_pls_golite062009
  • tRNA (guanine-N1-)-methyltransferase activity
    		•  2.0947794364355 bayes_pls_golite062009
  • transferase activity
    		•  1.84002196534744 bayes_pls_golite062009
  • catalytic activity
    		•  1.16774040077235 bayes_pls_golite062009
  • rRNA (guanosine-2'-O-)-methyltransferase activity
    		•  0.778889412216451 bayes_pls_golite062009
  • rRNA (guanine) methyltransferase activity
    		•  0.47764353619615 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.0655574594365502 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0643795631250501 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.71

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle