YRC Public Data Repository - Protein Structure Prediction

Protein:	RLMB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLMB_SHEON.

Description	E-value	Query Range	Subject Range
gi\|25316695 - pir\|\|A83664 tRNA/rRNA methyltransferase BH0113 [imported] - Bacillus halodurans (strain C-125) gi\|15612676, gi\|... - gi\|15612676\|ref\|NP_240979.1\| tRNA/rRNA methyltransferase [Bacillus halodurans C-125], gi\|10172725\|db...	266.0	[0..1]	[245..1]
gi\|82494751, gi\|... - gi\|82494751\|ref\|ZP_00880330.1\| RNA methyltransferase TrmH, group 3 [Shewanella sp. MR-4], gi\|8240699...	264.0	[0..1]	[246..1]
gi\|117611482, gi... - gi\|78688343\|ref\|ZP_00853045.1\| RNA methyltransferase TrmH, group 3 [Shewanella sp. ANA-3], gi\|785039...	264.0	[0..1]	[246..1]
gi\|113887635, gi... - gi\|114046193\|ref\|YP_736743.1\| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella sp. MR-7], gi...	263.0	[0..1]	[246..1]
gi\|48859457, gi\|... - gi\|67875040\|ref\|ZP_00504559.1\| RNA methyltransferase TrmH, group 3 [Clostridium thermocellum ATCC 27... gi\|196198671, gi... - gi\|196251913\|ref\|ZP_03150578.1\| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellu...	258.0	[0..2]	[244..33]
gi\|25316722 - pir\|\|H97287 rRNA methylase, YACO B. subtilis ortholog [imported] - Clostridium acetobutylicum gi\|15026220, gi\|... - gi\|15896402\|ref\|NP_349751.1\| rRNA methylase [Clostridium acetobutylicum ATCC 824], gi\|15026220\|gb\|AA...	257.0	[0..2]	[244..5]
gi\|160859382, gi... - gi\|160873860\|ref\|YP_001553176.1\| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS... gi\|151363865, gi... - gi\|152999247\|ref\|YP_001364928.1\| 23S rRNA (guanosine-2'-O-)-methyltransferase [Shewanella baltica OS...	257.0	[0..1]	[246..1]
RLMB_PHOLL - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Photorhabdus luminescens subsp. laumondii (stra... RLMB_PHOLL - 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB OS=Photorhabdus luminescens subsp. laumondii GN=rl...	257.0	[0..4]	[246..2]
gi\|82718442, gi\|... - gi\|82744207\|ref\|ZP_00906793.1\| RNA methyltransferase TrmH, group 3 [Shewanella sp. W3-18-1], gi\|8271... gi\|145563545, gi... - gi\|77815440\|ref\|ZP_00814670.1\| RNA methyltransferase TrmH, group 3 [Shewanella putrefaciens CN-32], ...	257.0	[0..1]	[246..1]
gi\|76876305, gi\|... - gi\|77361394\|ref\|YP_340969.1\| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas halopla...	257.0	[0..1]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKQDIIFGI HAVEALLKHS PERIIELWLL QGREDERLTP LIRQAKAFGT SIQVTSRKVL  60
   61 DEKAESTQHQ GIVARVKAAK ILAEHDLDEL LAKTDLPFLL ILDGVTDPHN LGACLRNADA 120
  121 AGVQGIIVPK DNSVGLTAVV SKVACGAAET VPLFQVTNLA RTMRHLQEKG VWIVGTAGEA 180
  181 DCELYQADLK GPLAIAMGAE GKGLRRLSRE CCDTLVSIPM SGSVSSLNVS VATGICLFEA 240
  241 VRQRRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.69897
Match:	1gz0A
Description:	RlmB, C-terminal domain; RlmB, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
tRNA methyltransferase activity	2.52700462137917	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.29844424181442	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.0947794364355	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
rRNA (guanosine-2'-O-)-methyltransferase activity	0.778889412216451	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009
structural constituent of ribosome	0.0643795631250501	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: