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Protein Overview: gi|24349699, gi|...

General Information:
Name(s) found: gi|24374973 [NCBI NR]
gi|24349699 [NCBI NR]
Description(s) found:
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  • gi|24374973|ref|NP_719016.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349699|gb|AAN56460.1|AE015783_3 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative [Shewanella oneidensis MR-1]gi|24349699|gb|AAN56460.1| 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 367 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: riboflavin biosynthetic process [ISSLink to PubMed article]
    Molecular Function: GTP cyclohydrolase II activity [ISSLink to PubMed article]
    3,4-dihydroxy-2-butanone-4-phosphate synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALHSIEEII EDIRQGKMVI LMDDEDRENE GDLILAAEMV TPEAINFMAK YGRGLICQTM  60
   61 TKARCQQLNL PLMVTNNNAQ FSTNFTVSIE AAEGVTTGIS AHDRAVTVKA AVAKDAKASD 120
  121 LVQPGHIFPL MAQDGGVLTR AGHTEAGCDL ARLAGLEPSG VIVEILNEDG TMARRPDLEI 180
  181 FSEKHGIKIG TIAALIEYRN TKETTVVREA KCKLPTRFGE FDMVTFRDTI DNQLHFALVK 240
  241 GEVKPDCLVR VHLQNTFNDL LHSERDQQRS WPLEKAMARI SAEGGVLVLL GNQEHSSEIL 300
  301 AKVKAFEAED QGQTPVSAKW QGTSRRVGVG SQILASLGVT KMRLLSSPKR YHSLSGFGLE 360
  361 VTECVAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..215] PSI-BLAST 84.69897 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
    2 View Details [216..367] PSI-BLAST 57.30103 Crystal Structure of E. coli GTP cyclohydrolase II in complex with GTP analogue, GMPcPP, and Zinc

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
    		•  7.56167968780416 bayes_pls_golite062009
  • GTP cyclohydrolase activity
    		•  2.51581618679202 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  1.92717548101547 bayes_pls_golite062009
  • cyclohydrolase activity
    		•  1.48770406828775 bayes_pls_golite062009
  • binding
    		•  1.05088380360844 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.637633326908211 bayes_pls_golite062009
  • catalytic activity
    		•  0.343636936190038 bayes_pls_golite062009
  • protein binding
    		•  0.291469273637145 bayes_pls_golite062009
  • DNA binding
    		•  0.21448652890147 bayes_pls_golite062009
    2
    Term Confidence Notes
  • GTP cyclohydrolase activity
    		•  4.36867535385235 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
    		•  3.7708397651039 bayes_pls_golite062009
  • cyclohydrolase activity
    		•  3.33696578638249 bayes_pls_golite062009
  • catalytic activity
    		•  1.40764037338379 bayes_pls_golite062009
  • binding
    		•  1.32693434551075 bayes_pls_golite062009
  • protein binding
    		•  0.418779722842637 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle