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Protein Overview: SYH_SHEON

General Information:
Name(s) found: SYH_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Histidine--tRNA ligase OS=Shewanella oneidensis (strain MR-1) GN=hisS PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 425 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: histidyl-tRNA aminoacylation [ISSLink to PubMed article]
    Molecular Function: histidine-tRNA ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQIQAIRG MNDILPTQSP LWQKVEAVLR SSVAAYGYSE IRTPIVENTD LFKRSIGEVT  60
   61 DIVEKEMYTF EDRNGDSLTL RPEGTASTVR AGNEHGLLYN QEQRLWYMGP MFRHERPQKG 120
  121 RYRQFHQFGV EIYGIGSADI DAEVLMLSAR LWEKLGITEH VTLELNTLGD PAERAAYREA 180
  181 LIAFLEQHKD KLDEDSQRRM YSNPLRVLDS KDPQVQSILA DAPALMDYLG EESSQHFAQL 240
  241 RELLDAVGIQ YRVNSRLVRG LDYYNRTVFE WVTNSLGSQG TVLAGGRYDG LVAQLGGKET 300
  301 PAVGFAMGLE RIVLLLETLA LTQDIPAEVD VYVAAMGDNC LVEAIKVAQE LRSALPTLRV 360
  361 MSHCGGGNLK KQMKRADKSG AQVALLIGEE ELAEGVVTVK YLRNDNEQQR VARNALSAFL 420
  421 AELTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..425] PSI-BLAST 83.0 Histidyl-tRNA synthetase (HisRS), C-terminal domain; Histidyl-tRNA synthetase (HisRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  6.0520403280225 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  6.0520403280225 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  6.04138870254626 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  5.91343220471745 bayes_pls_golite062009
  • ligase activity
    		•  4.85905957427768 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  3.10945929267718 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  2.76416144738864 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.17047432052132 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.07594942154162 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.72324031407565 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • binding
    		•  0.704322679140529 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.00572514744734753 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle