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Protein Overview: EX7L_SHEON

General Information:
Name(s) found: EX7L_SHEON [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Exodeoxyribonuclease 7 large subunit OS=Shewanella oneidensis (strain MR-1) GN=xseA PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 445 amino acids

    Gene Ontology:
    Cellular Component: exodeoxyribonuclease VII complex [ISSLink to PubMed article]
    Biological Process: DNA catabolic process [ISSLink to PubMed article]
    Molecular Function: exodeoxyribonuclease VII activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVPKNNIYT VSRLNGEVRQ ILEGQLGKIW LNGEISNFST PSSGHWYLTL KDHFSQIRCA  60
   61 MFKGRNQSVS FKPVNGQQVI VKGAISVYEP RGDYQLLIES MLPAGDGLLA QQFEALKMKL 120
  121 AALGLFAADT KRALPKNIQR IGVITSPTGA AIRDVLHVLA RRDPSIEVII YPTQVQGENA 180
  181 DINICQAINI ANQRLEVDVL LLTRGGGSLE DLWCFNSEAL AHTIYNSALP IVSAVGHEVD 240
  241 TTISDYVADV RAPTPSAGAE LLSQDSDNKS QRLATVLARL KQSASHYQLK QERRLSLLEH 300
  301 RLQRLDPKRT LQQFEQRFDE MQLRLEAALT NKLHGLSRRQ QQLASRLEQQ SPKHKLALEA 360
  361 NRLSYLATRL QDAMQDKLSH SGQRIKYVAH QLETVSPLAT LSRGYSITTD VNGAVITSAS 420
  421 QISLGDTITT QLSNERLMST VTRLP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] Pfam 11.026872 No description for PF01336.16 was found. No confident structure predictions are available.
    2 View Details [103..250] deduced N/A No confident structure predictions are available.
    3 View Details [251..445] PSI-BLAST 3.30103 human APP core domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.7871201389646 bayes_pls_golite062009
  • protein binding
    		•  1.17121102134656 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.521010838154847 bayes_pls_golite062009
  • DNA binding
    		•  0.440048609314838 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle