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Protein Overview: gi|24349451, gi|...

General Information:
Name(s) found: gi|24374779 [NCBI NR]
gi|24349451 [NCBI NR]
Description(s) found:
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  • gi|24374779|ref|NP_718822.1| alpha amylase domain-containing protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349451|gb|AAN56266.1|AE015764_1 alpha amylase domain protein [Shewanella oneidensis MR-1] [NCBI NR]
  • alpha amylase domain protein [Shewanella oneidensis MR-1]gi|24349451|gb|AAN56266.1| alpha amylase domain protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • alpha amylase domain protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 638 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carbohydrate metabolic process [ISSLink to PubMed article]
    Molecular Function: alpha-amylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEVQSVALY TVFHLNLAFS SIENEQHGEV IRKCYWPLLQ IAQKGIPVGI EMTAYTLEAV  60
   61 QQVDPLWVEE FKLLLQKGMC ELIASGDSQI IGPLVPAKVN QANLRLGQDT YHTLLGVRPQ 120
  121 IAYINEQAVS AGLLDVYIDQ GFEAVVVEWD NPYSHNPNWS NTLLDRPQSL QAASGRTIKV 180
  181 IWNHAIAFQK FQRYVHGELT LEDYLHYLVK IFKPGMLAFP VYGSDAEVFD FRPGRYQTEA 240
  241 DHVEGEWQRI STLFNTLAEM NNYCWQLPQH ILKFWQGSNA VEITNAEHPV SVKKQAKYNV 300
  301 SRWGLSGRND LLLNSQCYQR FATLAHNPHA TEQDWRNLCR MWASDLRTHL TAKRYQQLNL 360
  361 VANPANAPVF APWEAQQDIQ IEYDTQRRRL HIRTPKVHLS LNGNRGLAID KLAFKSHDFE 420
  421 PVLGTLSHGY FDHISYGADF YSNHLLMERF RARDRVTDLN RVNYELGCAE GNLVIYCRQS 480
  481 LKSGAIIKWY RIEHESLHTG FFFEDKQRPE ASIRLSYLTL LGCDNRAWYQ TNLGGVQEEF 540
  541 FQIQEDMDQG SPVSSIVSAN SAIGATAGQI QFGSGQCGVR LTWDPANCAA LPMISSKKID 600
  601 DKYLNRLWFS LAEADETLKE GGNLLDFNLC ITPESINL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..384] PSI-BLAST 35.0 Crystal structure of TT1467 from Thermus thermophilus HB8
    2 View Details [385..549] deduced N/A No confident structure predictions are available.
    3 View Details [550..638] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.54926008475976 bayes_pls_golite062009
  • deacetylase activity
    		•  1.07373873416936 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.04159714419468 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  0.78725677170464 bayes_pls_golite062009
  • hydrolase activity
    		•  0.600985675684655 bayes_pls_golite062009
  • mannosidase activity
    		•  0.32530435999467 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle