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Protein Overview: gi|24374759, gi|...

General Information:
Name(s) found: gi|24374759 [NCBI NR]
gi|24349425 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24374759|ref|NP_718802.1| flagellar basal body rod modification protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349425|gb|AAN56246.1|AE015762_3 basal-body rod modification protein FlgD [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 253 amino acids

    Gene Ontology:
    Cellular Component: bacterial-type flagellum hook [ISSLink to PubMed article]
    Biological Process: flagellum assembly [ISSLink to PubMed article]
    ciliary or flagellar motility [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTSSQVTQ TKNQPNTVST NNTKTSTNST GNPFLDGLRL PSNSAVPEAK SQQLTQEDFF  60
   61 SLLSQQLSMQ DPFKPVDNDQ MIAQMASFST VDGISKLNDQ IVNLNSVMTS SQALQASGLV 120
  121 GRKVLLPTDT GYISAESPGL NGVISTSEKI PVINIRIEDE KGQVVRTFTV DGSKGGNTDV 180
  181 KWDGLNDKGE PVAAGNYSIK ASGLVNDKSQ ALAVSTYGHV TSVSLGTAAT GAILNLKGGM 240
  241 AFKLSDVLAI TEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] Pfam 4.124939 No description for PF03963.5 was found. No confident structure predictions are available.
    2 View Details [134..253] PSI-BLAST 12.045757 Structure of C5a peptidase- a key virulence factor from Streptococcus


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle