Protein Overview: TRPB_SHEON

General Information:
Name(s) found:	TRPB_SHEON [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|24374548\|ref\|NP_718591.1\| tryptophan synthase subunit beta [Shewanella oneidensis MR-1] [NCBI NR] gi\|24349140\|gb\|AAN56035.1\|AE015738_10 tryptophan synthase, beta subunit [Shewanella oneidensis MR-1] [NCBI NR] Tryptophan synthase beta chain OS=Shewanella oneidensis (strain MR-1) GN=trpB PE=3 SV=1 [Swiss-Prot] tryptophan synthase, beta subunit [Shewanella oneidensis MR-1]gi\|24349140\|gb\|AAN56035.1\| tryptophan synthase, beta subunit [Shewanella oneidensis MR-1]gi\|39932405\|sp\|Q8ECV0\|TRPB_SHEON Tryptophan synthase beta chain [nrdb_11152004_Chlamydomonas] tryptophan synthase, beta subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta] tryptophan synthase subunit beta [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
Organism:	Shewanella oneidensis MR-1
Length:	396 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	tryptophan biosynthetic process [ISS]
Molecular Function:	tryptophan synthase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLKLNPYF GEYGGMYVPQ ILVPALKQLE SAFVEAQTDE SFQAEFTDLL KNYAGRPTAL  60
   61 TLTRNLSPNP MVKIYLKRED LLHGGAHKTN QVLGQALLAK RMGKKEIIAE TGAGQHGVAT 120
  121 ALACALLGLK CKVYMGAKDV ARQSPNVFRM RLMGAEVIPV TSGSATLKDA CNEAMRDWSG 180
  181 SYEKAHYLLG TAAGPHPFPT IVREFQRIIG EETKKQILER EGRLPDAVIA CVGGGSNAIG 240
  241 MFADFIDETN VELIGVEPAG KGIDTHMHGA PLKHGKTGIF FGMKAPLMQD SEGQIEESYS 300
  301 ISAGLDFPSV GPQHAHLNAI GRARYESATD DEALEAFQLL ARCEGIIPAL ESAHALAYAL 360
  361 RLAKECTKET ILVVNLSGRG DKDIFTVSDI LNGKEE

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
tryptophan synthase activity	3.77857340461162	bayes_pls_golite062009
catalytic activity	2.76038225023173	bayes_pls_golite062009
lyase activity	2.54165185299539	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	1.82148750304597	bayes_pls_golite062009
cysteine synthase activity	1.54736143994982	bayes_pls_golite062009
carbon-oxygen lyase activity	1.52790731142158	bayes_pls_golite062009
ammonia-lyase activity	0.943946746392831	bayes_pls_golite062009
threonine synthase activity	0.86525519885835	bayes_pls_golite062009
carbon-nitrogen lyase activity	0.8463142805916	bayes_pls_golite062009
L-threonine ammonia-lyase activity	0.57533596285038	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.95

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..396]	PSI-BLAST	107.0	Tryptophan synthase, beta-subunit

Protein Overview: TRPB_SHEON

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: