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Protein Overview: TRPB_SHEON

General Information:
Name(s) found: TRPB_SHEON [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Tryptophan synthase beta chain OS=Shewanella oneidensis (strain MR-1) GN=trpB PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 396 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tryptophan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: tryptophan synthase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLKLNPYF GEYGGMYVPQ ILVPALKQLE SAFVEAQTDE SFQAEFTDLL KNYAGRPTAL  60
   61 TLTRNLSPNP MVKIYLKRED LLHGGAHKTN QVLGQALLAK RMGKKEIIAE TGAGQHGVAT 120
  121 ALACALLGLK CKVYMGAKDV ARQSPNVFRM RLMGAEVIPV TSGSATLKDA CNEAMRDWSG 180
  181 SYEKAHYLLG TAAGPHPFPT IVREFQRIIG EETKKQILER EGRLPDAVIA CVGGGSNAIG 240
  241 MFADFIDETN VELIGVEPAG KGIDTHMHGA PLKHGKTGIF FGMKAPLMQD SEGQIEESYS 300
  301 ISAGLDFPSV GPQHAHLNAI GRARYESATD DEALEAFQLL ARCEGIIPAL ESAHALAYAL 360
  361 RLAKECTKET ILVVNLSGRG DKDIFTVSDI LNGKEE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..396] PSI-BLAST 107.0 Tryptophan synthase, beta-subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tryptophan synthase activity
    		•  3.77857340461162 bayes_pls_golite062009
  • catalytic activity
    		•  2.76038225023173 bayes_pls_golite062009
  • lyase activity
    		•  2.54165185299539 bayes_pls_golite062009
  • carbon-oxygen lyase activity, acting on phosphates
    		•  1.82148750304597 bayes_pls_golite062009
  • cysteine synthase activity
    		•  1.54736143994982 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  1.52790731142158 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.943946746392831 bayes_pls_golite062009
  • threonine synthase activity
    		•  0.86525519885835 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.8463142805916 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  0.57533596285038 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle