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Protein Overview: gi|24374410, gi|...

General Information:
Name(s) found: gi|24374410 [NCBI NR]
gi|24348978 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24374410|ref|NP_718453.1| superoxide dismutase, Fe [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348978|gb|AAN55897.1|AE015726_5 superoxide dismutase, Fe [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 194 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: removal of superoxide radicals [ISSLink to PubMed article]
    Molecular Function: metal ion binding [ISSLink to PubMed article]
    superoxide dismutase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFELPALPY AKNALEPHIS QETIEYHYGK HHNTYVVKLN GLIEGTDFAG KSLEEIIKTS  60
   61 TGGVFNNAAQ VWNHTFYWNC LAPNAGGEPT GPVADAIKAA FGSFDAFKAQ FTDSAVNNFG 120
  121 SAWTWLVKKA DGTVAIVNTS NAATPLTDST VTPILTVDVW EHAYYIDYRN VRPDYLAHFW 180
  181 QLVNWDFVNQ NFAG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] PSI-BLAST 79.221849 Fe superoxide dismutase (FeSOD)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • superoxide dismutase activity
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity, acting on superoxide radicals as acceptor
    		•  7.08472506566271 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.73079314406851 bayes_pls_golite062009
  • protein binding
    		•  1.36581969443298 bayes_pls_golite062009
  • binding
    		•  1.30562201415299 bayes_pls_golite062009
  • antioxidant activity
    		•  0.766723962166325 bayes_pls_golite062009
  • cation binding
    		•  0.485672227923388 bayes_pls_golite062009
  • metal ion binding
    		•  0.485672227923388 bayes_pls_golite062009
  • ion binding
    		•  0.480092270451566 bayes_pls_golite062009
  • catalytic activity
    		•  0.390489225704392 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle