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Protein Overview: gi|24374373, gi|...

General Information:
Name(s) found: gi|24374373 [NCBI NR]
gi|24348933 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374373|ref|NP_718416.1| exonuclease SbcD, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348933|gb|AAN55860.1|AE015722_10 exonuclease SbcD, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 399 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: exonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFIHTSDWH IGRQLHNQSL LDDQAYVLDQ IVALAQQHSV DAVIIAGDIY DRSIPPGSAV  60
   61 ALLNDVLNRL VNQLGIQVLM IAGNHDGHER LGFAAKQMAA SGLHIIGPLQ AELVPIRLTS 120
  121 PSGDAYFYPL PYAEPTTVRQ VFETDAKGLS VSSHEEAMAL LLEQVRSHDS QGLPKVVVSH 180
  181 CFLDGGSESE SERPLSIGGA DKITPRLFSE FDYVALGHLH GPQYKGCEQV RYSGSILKYS 240
  241 FSEQHQHKSV TLVDIAAQFP AQIQLLPLTA LRDLRMIEGE LANLLEEGRT DAKREDYLMV 300
  301 RLLDKHAILD AMGKLRSVYP NVLHLERTGL MAGDQAVVLN RDHIKKGEMA MFRDFFAQVS 360
  361 GDELTPAQQA VMEDILTQLH RDGLERSETH RDVKEEQAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..399] PSI-BLAST 29.0 Mre11

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity, acting on ester bonds
    		•  1.8004279996035 bayes_pls_golite062009
  • catalytic activity
    		•  1.76896578956606 bayes_pls_golite062009
  • phosphoprotein phosphatase activity
    		•  0.7866517939604 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.688917775744163 bayes_pls_golite062009
  • protein serine/threonine phosphatase activity
    		•  0.54706138092005 bayes_pls_golite062009
  • phosphatase activity
    		•  0.539555179646341 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle