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Protein Overview: gi|24374363, gi|...

General Information:
Name(s) found: gi|24374363 [NCBI NR]
gi|24348920 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|24374363|ref|NP_718406.1| anaerobic ribonucleoside triphosphate reductase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348920|gb|AAN55850.1|AE015721_13 anaerobic ribonucleoside-triphosphate reductase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 705 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: 2'-deoxyribonucleotide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: ribonucleoside-triphosphate reductase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVVIKRDGC RTPFDETRIR DAVIAAANSV GIEDTDYAAT VAACVSARVA NMAEVEIHHL  60
   61 QDVVENLLME GPYKSLARVY IEYRHDRDIC RDATSKLNLE IRGLVEQSNA ALLNENANKD 120
  121 SKVIPTQRDL LAGIVAKHYA KSHILPKDVV AAHEMGEIHY HDLDYSPFFP MFNCMLIDLA 180
  181 GMLTHGFKMG NAEIETPKSI STATAVTAQI IAQVASHIYG GTTINRIDEV LAPFVAKSYD 240
  241 KHYQVALNWQ IKDAKAYATA QTEKECHDAF QSLEYEVNTL HTANGQTPFV TFGFGLGTSW 300
  301 ESRLIQQSML KVRMAGLGKN RKTAVFPKLV FAIRDGINHK VGDCNYDVKQ LALKCATMRM 360
  361 YPDILNYEQV EKVTGSFKTP MGCRSFLGSY KENGELVHEG RNNLGVVSLN LPRVALEAKG 420
  421 DEAEFYRILD ERLLLARRAL DTRIERLNGV KARVAPILYM EGACGVRLRA DDDIAQIFKN 480
  481 GRASISLGYI GLHETINALY GTETHVFDNA QLREKAVAIV AYLKAATDAW KAETGYGFSL 540
  541 YSTPSESLCS RFCKLDARQF GVVTGVTDKG YYTNSFHLDV EKRVNPYDKI DFEQPYPAIA 600
  601 NGGFICYGEY PNMQHNIEAL ENVWDYSYSR VPYYGTNTPI DECYDCGFTG EFSCTSKGFT 660
  661 CPKCGNHEPS RVSVTRRVCG YLGSPDARPF NHGKQEEVKR RIKHL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] PSI-BLAST 3.221849 R1 subunit of ribonucleotide reductase, N-terminal domain; R1 subunit of ribonucleotide reductase, C-terminal domain
    2 View Details [101..705] PSI-BLAST 1000.0 Class III anaerobic ribonucleotide reductase NRDD subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ribonucleoside-triphosphate reductase activity
    		•  9.3477327019931 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor
    		•  8.4227686174128 bayes_pls_golite062009
  • ribonucleoside-diphosphate reductase activity
    		•  7.9433005176339 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH or CH2 groups
    		•  7.80351268764356 bayes_pls_golite062009
  • class III ribonucleotide reductase activity
    		•  5.84425109538191 bayes_pls_golite062009
  • CTP reductase activity
    		•  5.84425109538191 bayes_pls_golite062009
  • class I ribonucleotide reductase activity
    		•  3.5217325854654 bayes_pls_golite062009
  • catalytic activity
    		•  1.95058695475279 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.610428948300511 bayes_pls_golite062009
  • binding
    		•  0.314904881128799 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle