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Protein Overview: gi|24348890, gi|...

General Information:
Name(s) found: gi|24374338 [NCBI NR]
gi|24348890 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24374338|ref|NP_718381.1| DNA internalization-related competence protein ComEC/Rec2 [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348890|gb|AAN55825.1|AE015719_7 DNA internalization-related competence protein ComEC/Rec2 [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 769 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: establishment of competence for transformation [ISSLink to PubMed article]
    Molecular Function: competence pheromone activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGFSATLLS AMLWPSLLPI GCLPYLCLGA LILFKKAPSL SGALFAMFWL TGFCLVLSRQ  60
   61 DLPLPQQPTQ VRGEIISLVS QNSDWVSFDI VVDKPNLILG PRAKLRLTWQ SEAALRVGQV 120
  121 WDFTFMPKSI SSVLNQGGYN EQKQLISQHI VGKGRVIHAT LHAEYFSLRN HLITQLTPKL 180
  181 SGLMQGDILL ALILGDEQLI SPAKWQALRQ TGTGHLVSIS GLHLSVITAW ICASALFLLT 240
  241 RLAPHPSRRN LVLALMLAGS SALFYSYLAG FAVPTQRALV MILLIMLLSL LRRYSSAWDR 300
  301 LLFALFVVLL IDPLACLSAG FWLSFSALAI ILYTLESAQV ARSIDSNQTL FATSCVRLRQ 360
  361 FWAIQWRLSL ILGLVQAIFF GGVSIHSLWM NMLVVPWFSL LVIPLSMLAF LVWWLGELFG 420
  421 QSWMVPFQLA DLSLMPFGKL LEVSDELPGH WHSVSDGMLA LCLCVLLALT LWRYMPHRRQ 480
  481 YWQWHLMAGL LCVPMAIFVF QRIAQVETAQ WTLHLLDVGQ GLAAVVEKDT RALVYDTGAA 540
  541 FGEDFSYSER VIIPFLNTRG LADIDFIVIS HGDNDHAGGA QALAKAYPQA NWITDVDHLN 600
  601 GQPCLPQQIE WQQLTLRFIS PQTQAGGNNA SCVLRIDDGQ QSLLLSGDIE KETESVLIER 660
  661 VKAGVILKSQ VLIAPHHGSR TSSTQAFIDS VAPELVLFPA GLNNRYGFPK DDVIERYQAR 720
  721 QIRHLTTGME GQISVTFEHG TLEVKTYRRD FAPFWYNRLF RFGDLINPE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..195] MSA 3.390995 View MSA. No confident structure predictions are available.
    2 View Details [196..347] deduced N/A No confident structure predictions are available.
    3 View Details [348..500] MSA 2.40499 View MSA. No confident structure predictions are available.
    4 View Details [501..769] PSI-BLAST 12.045757 Crystal structure of the complete modular teichioic acid phosphorylcholine esterase Pce (CbpE) from Streptococcus pneumoniae

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.590913389028346 bayes_pls_golite062009
  • catalytic activity
    		•  0.398796871066338 bayes_pls_golite062009
  • protein binding
    		•  0.233736652147815 bayes_pls_golite062009
  • RNA binding
    		•  0.165539790635644 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0778913972787759 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle