YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24348890, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.55
Transmembrane Helix	11	34	0.83
Cytoplasmic	35	39	0.53
Transmembrane Helix	40	59	0.85
Non-Cytoplasmic	60	218	0.70
Transmembrane Helix	219	240	0.91
Cytoplasmic	241	249	0.85
Transmembrane Helix	250	269	0.93
Non-Cytoplasmic	270	274	0.74
Transmembrane Helix	275	294	0.88
Cytoplasmic	295	301	0.85
Transmembrane Helix	302	325	0.90
Non-Cytoplasmic	326	367	0.88
Transmembrane Helix	368	389	0.87
Cytoplasmic	390	393	0.83
Transmembrane Helix	394	416	0.90
Non-Cytoplasmic	417	453	0.92
Transmembrane Helix	454	474	0.90
Cytoplasmic	475	480	0.91
Transmembrane Helix	481	500	0.92
Non-Cytoplasmic	501	769	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGFSATLLS AMLWPSLLPI GCLPYLCLGA LILFKKAPSL SGALFAMFWL TGFCLVLSRQ  60
   61 DLPLPQQPTQ VRGEIISLVS QNSDWVSFDI VVDKPNLILG PRAKLRLTWQ SEAALRVGQV 120
  121 WDFTFMPKSI SSVLNQGGYN EQKQLISQHI VGKGRVIHAT LHAEYFSLRN HLITQLTPKL 180
  181 SGLMQGDILL ALILGDEQLI SPAKWQALRQ TGTGHLVSIS GLHLSVITAW ICASALFLLT 240
  241 RLAPHPSRRN LVLALMLAGS SALFYSYLAG FAVPTQRALV MILLIMLLSL LRRYSSAWDR 300
  301 LLFALFVVLL IDPLACLSAG FWLSFSALAI ILYTLESAQV ARSIDSNQTL FATSCVRLRQ 360
  361 FWAIQWRLSL ILGLVQAIFF GGVSIHSLWM NMLVVPWFSL LVIPLSMLAF LVWWLGELFG 420
  421 QSWMVPFQLA DLSLMPFGKL LEVSDELPGH WHSVSDGMLA LCLCVLLALT LWRYMPHRRQ 480
  481 YWQWHLMAGL LCVPMAIFVF QRIAQVETAQ WTLHLLDVGQ GLAAVVEKDT RALVYDTGAA 540
  541 FGEDFSYSER VIIPFLNTRG LADIDFIVIS HGDNDHAGGA QALAKAYPQA NWITDVDHLN 600
  601 GQPCLPQQIE WQQLTLRFIS PQTQAGGNNA SCVLRIDDGQ QSLLLSGDIE KETESVLIER 660
  661 VKAGVILKSQ VLIAPHHGSR TSSTQAFIDS VAPELVLFPA GLNNRYGFPK DDVIERYQAR 720
  721 QIRHLTTGME GQISVTFEHG TLEVKTYRRD FAPFWYNRLF RFGDLINPE