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Protein Overview: gi|24374300, gi|...

General Information:
Name(s) found: gi|24374300 [NCBI NR]
gi|24348841 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374300|ref|NP_718343.1| phosphoribosylglycinamide formyltransferase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348841|gb|AAN55787.1|AE015715_6 phosphoribosylglycinamide formyltransferase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 214 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: purine ribonucleotide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: phosphoribosylglycinamide formyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQSCRVVVL ISGNGSNLQA VIDGCDDNLQ AEVVGVISNN PDAYGLVRAH HSEIDTSCVI  60
   61 ARPGESRSDY DARLLAAIEQ YQPDLIVLAG FMRILTNDFV NHYLGRMINI HPSLLPKFTG 120
  121 LNTHQRAIDA KETEHGASVH FVTPELDAGP VVLQAKVPVY EDDTAEMLAA RVHEQEHAIY 180
  181 PLVVKWFSHQ RLNMQDGQAY LDGTLIGPSG YAPD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] PSI-BLAST 57.69897 Glycinamide ribonucleotide transformylase, GART

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methyltransferase activity
    		•  4.09881190860822 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.01667310557403 bayes_pls_golite062009
  • hydroxymethyl-, formyl- and related transferase activity
    		•  3.81159871979977 bayes_pls_golite062009
  • glycine hydroxymethyltransferase activity
    		•  3.49010887242285 bayes_pls_golite062009
  • phosphoribosylglycinamide formyltransferase activity
    		•  2.94311083909314 bayes_pls_golite062009
  • methionyl-tRNA formyltransferase activity
    		•  2.39150724300118 bayes_pls_golite062009
  • catalytic activity
    		•  2.16003793103722 bayes_pls_golite062009
  • binding
    		•  1.1813924954238 bayes_pls_golite062009
  • transferase activity
    		•  1.01502594768782 bayes_pls_golite062009
  • ligase activity
    		•  0.922788719307786 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.67

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle