YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374300, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374300, gi|....

Description	E-value	Query Range	Subject Range
gi\|120599231, gi... - gi\|120599231\|ref\|YP_963805.1\| phosphoribosylglycinamide formyltransferase [Shewanella sp. W3-18-1], ... gi\|77808587, gi\|... - gi\|77816465\|ref\|ZP_00815651.1\| Phosphoribosylglycinamide formyltransferase [Shewanella putrefaciens ...	238.0	[0..1]	[214..1]
gi\|88795665, gi\|... - gi\|88795665\|ref\|ZP_01111358.1\| phosphoribosylglycinamide formyltransferase [Alteromonas macleodii 'D...	235.0	[0..1]	[214..1]
gi\|160860409, gi... - gi\|160874887\|ref\|YP_001554203.1\| phosphoribosylglycinamide formyltransferase [Shewanella baltica OS1... gi\|153000254, gi... - gi\|153000254\|ref\|YP_001365935.1\| phosphoribosylglycinamide formyltransferase [Shewanella baltica OS1...	235.0	[0..1]	[214..1]
gi\|82498183, gi\|... - gi\|82498183\|ref\|ZP_00883694.1\| Phosphoribosylglycinamide formyltransferase [Shewanella sp. MR-4], gi... gi\|113889387, gi... - gi\|78691619\|ref\|ZP_00856225.1\| Phosphoribosylglycinamide formyltransferase [Shewanella sp. MR-7], gi... gi\|117920987, gi... - gi\|78688083\|ref\|ZP_00852806.1\| Phosphoribosylglycinamide formyltransferase [Shewanella sp. ANA-3], g...	234.0	[0..1]	[214..1]
gi\|78368725, gi\|... - gi\|78368725\|ref\|ZP_00838936.1\| Phosphoribosylglycinamide formyltransferase [Shewanella sp. PV-4], gi...	233.0	[0..1]	[214..1]
gi\|56460763, gi\|... - gi\|56460763\|ref\|YP_156044.1\| phosphoribosylglycinamide formyltransferase [Idiomarina loihiensis L2TR...	231.0	[0..5]	[214..2]
gi\|77958968 - gi\|77958968\|ref\|ZP_00822993.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	229.0	[0..5]	[214..3]
gi\|114333921, gi... - gi\|69949367\|ref\|ZP_00637364.1\| Phosphoribosylglycinamide formyltransferase [Shewanella frigidimarina...	229.0	[0..1]	[214..1]
gi\|71145720, gi\|... - gi\|71279980\|ref\|YP_269893.1\| phosphoribosylglycinamide formyltransferase [Colwellia psychrerythraea ...	228.0	[0..6]	[214..4]
gi\|85694914, gi\|... - gi\|85711413\|ref\|ZP_01042472.1\| Folate-dependent phosphoribosylglycinamide formyltransferase [Idiomar...	228.0	[0..5]	[214..2]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQSCRVVVL ISGNGSNLQA VIDGCDDNLQ AEVVGVISNN PDAYGLVRAH HSEIDTSCVI  60
   61 ARPGESRSDY DARLLAAIEQ YQPDLIVLAG FMRILTNDFV NHYLGRMINI HPSLLPKFTG 120
  121 LNTHQRAIDA KETEHGASVH FVTPELDAGP VVLQAKVPVY EDDTAEMLAA RVHEQEHAIY 180
  181 PLVVKWFSHQ RLNMQDGQAY LDGTLIGPSG YAPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	1c2tA
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.09881190860822	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01667310557403	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	3.81159871979977	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.49010887242285	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	2.94311083909314	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	2.39150724300118	bayes_pls_golite062009
catalytic activity	2.16003793103722	bayes_pls_golite062009
binding	1.1813924954238	bayes_pls_golite062009
transferase activity	1.01502594768782	bayes_pls_golite062009
ligase activity	0.922788719307786	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: