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Protein Overview: gi|24348661, gi|...

General Information:
Name(s) found: gi|24374157 [NCBI NR]
gi|24348661 [NCBI NR]
Description(s) found:
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  • gi|24374157|ref|NP_718200.1| 4-amino-4-deoxychorismate lyase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348661|gb|AAN55644.1|AE015703_6 4-amino-4-deoxychorismate lyase [Shewanella oneidensis MR-1] [NCBI NR]
  • 4-amino-4-deoxychorismate lyase [Shewanella oneidensis MR-1]gi|24348661|gb|AAN55644.1| 4-amino-4-deoxychorismate lyase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • 4-amino-4-deoxychorismate lyase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 269 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: folic acid and derivative metabolic process [ISSLink to PubMed article]
    Molecular Function: 4-amino-4-deoxychorismate lyase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIWVNGVLQA SIAPTDRGLA YGDGLFATMR SSKRGILFFQ QHQARLETGA ARLGFDWQMS  60
   61 PALAEQLDTL AAQYPQHCIK LMVTRGVGGR GYAPPEQVNV TEVVSVHPIP AHYAAWQQQG 120
  121 IRLKTSAVQL GHQPLLAGIK HLNRLEQVLI KSLPLPQGYD DWLVLDCMGK VIESSMANIF 180
  181 FIKDNQVVTP SLEHCGVAGV MREQVMLALL ALQMDIDCLP FGAERLVEFD SAFITNSVLG 240
  241 VVDVLAIDSH SFKPSPLTAD LRQTLSLSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..269] PSI-BLAST 58.221849 Aminodeoxychorismate lyase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • D-alanine:2-oxoglutarate aminotransferase activity
    		•  5.92270586163256 bayes_pls_golite062009
  • branched-chain-amino-acid transaminase activity
    		•  4.40524391258229 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  2.8158800446404 bayes_pls_golite062009
  • transaminase activity
    		•  2.8068647476058 bayes_pls_golite062009
  • catalytic activity
    		•  2.79277628243817 bayes_pls_golite062009
  • 4-amino-4-deoxychorismate lyase activity
    		•  2.07400020867227 bayes_pls_golite062009
  • L-alanine:2-oxoglutarate aminotransferase activity
    		•  1.88117354921159 bayes_pls_golite062009
  • alanine-oxo-acid transaminase activity
    		•  1.88117354921159 bayes_pls_golite062009
  • transferase activity
    		•  1.36772068349993 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.20929492402161 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle