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Protein Overview: gi|24374107, gi|...

General Information:
Name(s) found: gi|24374107 [NCBI NR]
gi|24348597 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24374107|ref|NP_718150.1| Slt family transglycosylase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348597|gb|AAN55594.1|AE015698_2 transglycosylase, Slt family [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 515 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: peptidoglycan catabolic process [ISSLink to PubMed article]
    Molecular Function: catalytic activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSLYVVVG GFALLTGCQT LDNHQVTKPE AQTVTTENTV PQYYLATEPE SAQVTDVWER  60
   61 IRQGMQLPVP DKKLVNYYRD WYINNPKHLE VISERAAPYM YLIVEELEKR HLPIEIALLP 120
  121 IIESAFDPSA SSASAASGLW QFTTPMASHF GLEMNWWYDG RRDVPASTTA ALDMLEYLYN 180
  181 KTNNNWLYAI AAYNTGESKV LNAIKRNEDK GLKTDFWSLD LPKETKRYVP QLLALAEVIK 240
  241 HADEYGITLA PINNSPSIEV VDIDSQIDLA MAAGLANMTT TELAKLNPGY NRWATSPLGP 300
  301 HTLVLPIDKS EEFKKALAET ESEARVSWLR YTIKSGDSIG SIAQKHHTTV NAIRAANGMK 360
  361 SNNIVAGRHL IIPVSADDKQ LYALSTSQKL PKKAAGATSG NKLTYQVKSG DSLWQIAQAH 420
  421 NVSVKQLTAW NHLSKDSKLQ TGQKLTIVAP QEKLDSEHIR TVSYKVKSGD SLAQIASKFK 480
  481 VTVAELLEWN SLTPSQYILP GQVLKLVVDE SNLNA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..261] PSI-BLAST 26.0 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
    2 View Details [262..449] MSA 4.405993 View MSA. No confident structure predictions are available.
    3 View Details [450..515] FFAS03 3.32 No description for 2djpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • penicillin binding
    		•  2.64957480679626 bayes_pls_golite062009
  • catalytic activity
    		•  1.95328415115451 bayes_pls_golite062009
  • lysozyme activity
    		•  1.83799209924951 bayes_pls_golite062009
  • drug binding
    		•  1.54697929389118 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  1.16054683174437 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.07226857049823 bayes_pls_golite062009
  • hydrolase activity
    		•  0.677491712259 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  0.45061419828567 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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