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Protein Overview: gi|24374031, gi|...

General Information:
Name(s) found: gi|24374031 [NCBI NR]
gi|24348501 [NCBI NR]
Description(s) found:
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  • gi|24374031|ref|NP_718074.1| phosphogluconate dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348501|gb|AAN55518.1|AE015690_6 6-phosphogluconate dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
  • 6-phosphogluconate dehydratase [Shewanella oneidensis MR-1]gi|24348501|gb|AAN55518.1| 6-phosphogluconate dehydratase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • 6-phosphogluconate dehydratase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
  • phosphogluconate dehydratase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 608 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: Entner-Doudoroff pathway [ISSLink to PubMed article]
    Molecular Function: phosphogluconate dehydratase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSVVQSVTD RIIARSKASR EAYLAALNDA RNHGVHRSSL SCGNLAHGFA ACNPDDKNAL  60
   61 RQLTKANIGI ITAFNDMLSA HQPYETYPDL LKKACQEVGS VAQVAGGVPA MCDGVTQGQP 120
  121 GMELSLLSRE VIAMATAVGL SHNMFDGALL LGICDKIVPG LLIGALSFGH LPMLFVPAGP 180
  181 MKSGIPNKEK ARIRQQFAQG KVDRAQLLEA EAQSYHSAGT CTFYGTANSN QLMLEVMGLQ 240
  241 LPGSSFVNPD DPLREALNKM AAKQVCRLTE LGTQYSPIGE VVNEKSIVNG IVALLATGGS 300
  301 TNLTMHIVAA ARAAGIIVNW DDFSELSDAV PLLARVYPNG HADINHFHAA GGMAFLIKEL 360
  361 LDAGLLHEDV NTVAGYGLRR YTQEPKLLDG ELRWVDGPTV SLDTEVLTSV ATPFQNNGGL 420
  421 KLLKGNLGRA VIKVSAVQPQ HRVVEAPAVV IDDQNKLDAL FKSGALDRDC VVVVKGQGPK 480
  481 ANGMPELHKL TPLLGSLQDK GFKVALMTDG RMSGASGKVP AAIHLTPEAI DGGLIAKVQD 540
  541 GDLIRVDALT GELSLLVSDT ELATRTATEI DLRHSRYGMG RELFGVLRSN LSSPETGARS 600
  601 TSAIDELY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..608] PSI-BLAST 1000.0 No description for 2gp4A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphogluconate dehydratase activity
    		•  6.35859617166212 bayes_pls_golite062009
  • 3-isopropylmalate dehydratase activity
    		•  4.12520779605632 bayes_pls_golite062009
  • catalytic activity
    		•  1.99003321006923 bayes_pls_golite062009
  • dihydroxy-acid dehydratase activity
    		•  1.86041876362237 bayes_pls_golite062009
  • lyase activity
    		•  1.77649447753579 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  1.77249348870989 bayes_pls_golite062009
  • hydro-lyase activity
    		•  1.68972070574507 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.64

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle