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Protein Overview: DAPE_SHEON

General Information:
Name(s) found: DAPE_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Succinyl-diaminopimelate desuccinylase OS=Shewanella oneidensis (strain MR-1) GN=dapE PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 384 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lysine biosynthetic process via diaminopimelate [ISSLink to PubMed article]
    Molecular Function: succinyl-diaminopimelate desuccinylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDAAHSSQT GPVTELTKAL IARPSVTPLD EGCQTLMAER LAAIGFNIEA MVFEDTTNMW  60
   61 ARRGNTGPVF CFAGHTDVVP TGDLSRWHTP PFEPTIIDGY LYGRGAADMK GSLAAMVVAT 120
  121 ERFVAKHPNH PGSIAFLITS DEEGPFINGT TRVIDTLEAR NEKITWALVG EPSSTLKLGD 180
  181 VVKNGRRGSL TANLTVKGVQ GHVAYPHLAD NPIHKAAPFL AELSQTHWDN GNAFFPPTSM 240
  241 QIANINGGTG ASNVIPGALE VMFNFRYSTE VTAEILIERV ETLLTAHELD YDIRWTFNGL 300
  301 PFLTGEGPLL DATRHAIRQV TGYDTDPQTT GGTSDGRFIA PTGAKVLELG PVNATIHKVN 360
  361 ECVKVDDLEQ LALCYEVILE QLLC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..384] PSI-BLAST 76.69897 Crystal structure of succinyl diaminopimelate desuccinylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • succinyl-diaminopimelate desuccinylase activity
    		•  3.13788333436821 bayes_pls_golite062009
  • hydrolase activity
    		•  3.0609849976664 bayes_pls_golite062009
  • peptidase activity
    		•  3.04706302825019 bayes_pls_golite062009
  • catalytic activity
    		•  2.3710874246093 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  2.30644893326426 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.25673143627992 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  0.76593160329727 bayes_pls_golite062009
  • N-formylglutamate deformylase activity
    		•  0.17769913093601 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.0926675628351197 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle