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Protein Overview: gi|24374006, gi|...

General Information:
Name(s) found: gi|24374006 [NCBI NR]
gi|24348466 [NCBI NR]
Description(s) found:
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  • gi|24374006|ref|NP_718049.1| glucoamylase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348466|gb|AAN55493.1|AE015687_5 glucoamylase [Shewanella oneidensis MR-1] [NCBI NR]
  • glucoamylase [Shewanella oneidensis MR-1]gi|24348466|gb|AAN55493.1| glucoamylase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • glucoamylase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 847 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carbohydrate catabolic process [ISSLink to PubMed article]
    Molecular Function: glucan 1,4-alpha-glucosidase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPFTEQPK QDCGQLKQHS SSLTLKPIAL AITASLIGLA SLSACSPIAD KSASSTTSNA  60
   61 VSNNEINTAS YNIAPGAPGK APTWAFSGKT GIGTSYEPYT QGQYQDSQQN PISRVWFSIA 120
  121 QGILTETMFG LIHNAQLKEL QFVITGNGFV DTEKDNTISS IEYLDTDANG RPQSLAYKII 180
  181 NRDVEGKYQI EKHIFTDPGR DTLVMRVTFT AFEAGITPHL YVNPHIDNAG ANDIGRIDHQ 240
  241 ALIAYTAAPH SSVMTVKSDI NFVRATTGFE GISDGLADLA DNGTLDTLYS ATSAPDNRTQ 300
  301 GNIAFTASYP EVTPNQPLNI NLAIGFGHDE LSSLTNAKAT LNAGYDAVLG QYNAGWRSYL 360
  361 QSLPAIAGMA KSTTDNGKLL YTSAMVLKAQ EDKTYAGALI ASLSNPWGDT VSAITPSTGY 420
  421 KAVWPRDFYQ CAMAFLAMGD TQTPKVAFEY LKKVQVSDKT SGFSGTPGWF LQKTHVDGQI 480
  481 EWVGVQLDQT AMPIMLGWKL WQAGGLSQTE LSYWYQEMLK GAADFLVSGG EVNLDWNHTP 540
  541 VTPPKTQQER WEEQAGFSPS TTAAVIAGLV TASDIAKAVN DLNASQRYLD SAKTLNQQLE 600
  601 KHLVTTQGLL TDSQGVSTPY YLRLSPHGEP NTATKLAANN GKAGLDQRQI LDAGFLELVR 660
  661 YGVRGATDKL INQSLALVDN TKLEDNLRLK YSFTAKDGSS VPGFRRYGND GYGEDTVTGA 720
  721 NYAESGGNSD NQRGRVWPFF TGERGHFELA LASAKGELTG TKGQQTKQQL INTYVQGMET 780
  781 FANAGMMLPE QAWDGVGNAT RYQYRLGQGT NSATPLAWTH AEYIKLVRSM NDGQLWDHYP 840
  841 IVPETLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..847] PSI-BLAST 159.0 Bacterial glucoamylase, C-terminal domain; Bacterial glucoamylase, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  1.21567860634685 bayes_pls_golite062009
  • racemase and epimerase activity
    		•  1.19295069153058 bayes_pls_golite062009
  • catalytic activity
    		•  1.14137378674629 bayes_pls_golite062009
  • trehalase activity
    		•  0.85077242065624 bayes_pls_golite062009
  • isomerase activity
    		•  0.62004466537384 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle