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Protein Overview: gi|24348396, gi|...

General Information:
Name(s) found: gi|24373958 [NCBI NR]
gi|24348396 [NCBI NR]
Description(s) found:
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  • gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1] [NCBI NR]
  • DNA gyrase, A subunit [Shewanella oneidensis MR-1]gi|24348396|gb|AAN55445.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • DNA gyrase, A subunit [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 919 amino acids

    Gene Ontology:
    Cellular Component: DNA topoisomerase complex (ATP-hydrolyzing) [ISSLink to PubMed article]
    Biological Process: DNA replication [ISSLink to PubMed article]
    Molecular Function: DNA topoisomerase (ATP-hydrolyzing) activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLASSISP INIEDELKNS YLDYAMSVIV GRALPDVRDG LKPVHRRVLF AMSELKNDWN  60
   61 KPYKKSARVV GDVIGKYHPH GDSAVYDTIV RMAQPFSLRY TLVDGQGNFG SVDGDSAAAM 120
  121 RYTEIRMDKL AHQLLADLEK ETVDYVPNYD GTEQIPAVLP TRVPNLLING SSGIAVGMAT 180
  181 NIPPHNLTEV VKGCLALIAD PALSIEQLMD YIPGPDFPTA AIINGRKGII DAYKTGRGRA 240
  241 IMRALAEVET EENGRERIIV TEIPYQVNKA RLIEKIAELV KDKKLEGISG LRDESDKDGM 300
  301 RIVIEIKRGE VGEVVLNNLY AQTQMQCSFG INMVALTNGQ PKLFNLKEML ECFILHRREV 360
  361 VTRRTVFELR KARERAHILE ALAVALANID PIIALIKASP TPADAKVKLV EQGWALGHVQ 420
  421 GMLEKAGDDA ARPEWLEPEY GIRDGLYYLT EQQAQAILEL RLHRLTGLEH DKIIAEYEEL 480
  481 LEFIAGLLFI LRSPERLMEV IKEELEEILA EYGDARRTVI NANEIDMSLE DLINEEDVVV 540
  541 TLSHLGYAKY QPLSDYQAQR RGGKGKVATK VKDEDFVEKL LVANTHDTIL CFSDFGKMYW 600
  601 LKVYQLPLAS RTSRGRPIVN LLPLADGERI TAILPVREYA EDKYIIMATS NGTVKKTALT 660
  661 AYSNPRANGI IAVNLKDGDQ LIGVDITNGD DEIMLFSNEG KVVRFKEGEE VAVLDENGNP 720
  721 VLDEEGNPQI NFKGVRPMGR GATGVRGIKL EEGQRVVSLI VPKDDGAILT VTENGYGKRT 780
  781 ELSEYPSKSR ATKGVVSIKV SERNGAVVGA VQVGGNDEIM LISDKGTLVR TPANGVSIIG 840
  841 RNTQGVTIIR TASDEKVVGL QRIDEIQGDE DEVELDENGM PIAPVIAEGD SVQEEPLEEE 900
  901 DELEELDEDE ELDDEQDED

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..527] PSI-BLAST 1000.0 59KDA FRAGMENT OF GYRASE A FROM E. COLI
    2 View Details [528..919] PSI-BLAST 102.0 A Superhelical Spiral in Escherichia coli DNA Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling Bias

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA topoisomerase activity
    		•  16.1862836613251 bayes_pls_golite062009
  • DNA topoisomerase (ATP-hydrolyzing) activity
    		•  15.3845248199845 bayes_pls_golite062009
  • isomerase activity
    		•  11.5598219279347 bayes_pls_golite062009
  • DNA binding
    		•  4.42972615310468 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.21774496265744 bayes_pls_golite062009
  • binding
    		•  3.95084202265591 bayes_pls_golite062009
  • catalytic activity
    		•  1.83123392049501 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.17291817800492 bayes_pls_golite062009
  • protein binding
    		•  0.0229806746449869 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle