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Protein Overview: gi|24373917, gi|...

General Information:
Name(s) found: gi|24373917 [NCBI NR]
gi|24348345 [NCBI NR]
Description(s) found:
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  • gi|24373917|ref|NP_717960.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348345|gb|AAN55404.1|AE015678_4 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] [NCBI NR]
  • site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1]gi|24348345|gb|AAN55404.1| site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 288 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA recombination [ISSLink to PubMed article]
    Molecular Function: site-specific recombinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNALKTKV AILSSFYTYL ISEEFCERNP AQIWLNHSRF ALNKQYQNQT DEDENSLAFT  60
   61 ELQWSYVMTT VTQLAEILPE LHQRSLFLIS LTYSCYLRIS DVSARVGYSP VMGQFRQNTQ 120
  121 TGIWSFHIPL SKGGKKRSVA ISKALLAGLV KYRQFLGLPD YPSQGELHPL FVRHRAAGRG 180
  181 RDVGLVNANL GIRQIREEIQ AIINLAADKA QTDGFIQDAA QMRKLTAHNI RHTGITHDIN 240
  241 INRRPLSHVQ ADAGHESIDT TSKYLHTTQI ERHESAYNKP LDHLQGID

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..288] PSI-BLAST 36.522879 SITE-SPECIFIC RECOMBINASE, XERD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • site-specific recombinase activity
    		•  4.99325011803106 bayes_pls_golite062009
  • catalytic activity
    		•  2.22520758916604 bayes_pls_golite062009
  • integrase activity
    		•  1.98780702210031 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.11292854906722 bayes_pls_golite062009
  • DNA binding
    		•  0.10970863758177 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.06580979261817 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle