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Protein Overview: gi|24373713, gi|...

General Information:
Name(s) found: gi|24373713 [NCBI NR]
gi|24348082 [NCBI NR]
Description(s) found:
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  • gi|24373713|ref|NP_717756.1| alpha amylase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24348082|gb|AAN55200.1|AE015658_6 alpha amylase family protein [Shewanella oneidensis MR-1] [NCBI NR]
  • alpha amylase family protein [Shewanella oneidensis MR-1]gi|24348082|gb|AAN55200.1| alpha amylase family protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • alpha amylase family protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 673 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carbohydrate catabolic process [ISSLink to PubMed article]
    Molecular Function: alpha-amylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQLMTIQA TASQTTALQA IVSKTMPSNL NTAEADTSLA QNSTEQTDSF KPVVYQIFTR  60
   61 LYGNKNPTNN PWGTISENGV GKFNDIDDSA LKSIKALGVT HVWYTGVPHH ALIADYSVIG 120
  121 VSSDDPDVVK GRAGSPYAVK DYYNVNPDLA INPAKRLQEF QALIERTHKQ GLKVIIDIVP 180
  181 NHVARNYHSV TKPQGVRDFG EDDIQTVEYA KHNNFYYVID NNQVHGFEVP DLPKSLKPLD 240
  241 GESHPLSNGQ FKEIPAKWTG NGSRLAKPDM NDWYETVKIN YGVRPDGSHD FPALPPRYAT 300
  301 LSAEQHYAFW QQHNHELPNS WIKFNQISQY WLAMGVDGFR YDMAEMVPVE FWSYLNSHIK 360
  361 HSYPDAFILA EVYNPALYSD YIQLGKMDYL YDKVDLYDTL KAIMAGQKST ELIAADQAKV 420
  421 QDIGSHMLHF LENHDEQRIA NAAFLGTLSG NASTDAVDPR YALPAMVVSA TLSTSPTLIY 480
  481 FGQEVGEAAT QNLGFGHASR TSIFDYAGVP AHQRWMNKGK FDGGQSTATE LALRAYYQKL 540
  541 LNLSTGKNAP ALLGQYYSLD AANRSARPST MDSHGSATGY DDSTFAFVRF EANSTNKMGQ 600
  601 KLIIVSNFSQ VQAKSLFLKL PKSLIEQWQL TDATYQLKDL LEDNAAQLIV KQGEGHIQVQ 660
  661 FAPLSSAIFE LAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..673] PSI-BLAST 47.154902 Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt D465N

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • hydrolase activity, acting on glycosyl bonds
    		•  3.1190602686215 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  2.98773241907716 bayes_pls_golite062009
  • catalytic activity
    		•  2.22613067995402 bayes_pls_golite062009
  • hydrolase activity
    		•  1.97740088175981 bayes_pls_golite062009
  • glucosidase activity
    		•  0.58717079348538 bayes_pls_golite062009
  • hexosaminidase activity
    		•  0.16438321606077 bayes_pls_golite062009
  • amylase activity
    		•  0.0914002140078796 bayes_pls_golite062009
  • alpha-amylase activity
    		•  0.0521244165288097 bayes_pls_golite062009
  • chitinase activity
    		•  0.0382131529139698 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle