YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373713, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	673 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373713, gi|....

Description	E-value	Query Range	Subject Range
gi\|78509232, gi\|... - gi\|78691363\|ref\|ZP_00855983.1\| Alpha amylase, catalytic subdomain [Shewanella sp. MR-7], gi\|78509232...	311.0	[0..1]	[671..34]
gi\|78504255, gi\|... - gi\|78688013\|ref\|ZP_00852741.1\| Alpha amylase, catalytic subdomain [Shewanella sp. ANA-3], gi\|7850425...	310.0	[0..1]	[672..34]
gi\|113885157, gi... - gi\|82497861\|ref\|ZP_00883385.1\| Alpha amylase, catalytic subdomain [Shewanella sp. MR-4], gi\|82404125...	307.0	[0..17]	[671..35]
gi\|66045726, gi\|... - gi\|66045726\|ref\|YP_235567.1\| Alpha amylase, catalytic region [Pseudomonas syringae pv. syringae B728...	296.0	[0..44]	[673..12]
gi\|71557682, gi\|... - gi\|71737129\|ref\|YP_274838.1\| trehalose synthase/ maltokinase [Pseudomonas syringae pv. phaseolicola ...	294.0	[0..44]	[673..12]
gi\|75812283 - gi\|75812283\|dbj\|BAE45038.1\| trehalose-6-phosphate hydrolase [Geobacillus stearothermophilus]	293.0	[0..44]	[672..2]
O16G_GEOTM - Oligo-1,6-glucosidase OS=Geobacillus thermoglucosidasius GN=malL PE=1 SV=1	293.0	[0..46]	[671..3]
gi\|89085557, gi\|... - gi\|89099810\|ref\|ZP_01172683.1\| alpha,alpha-phosphotrehalase [Bacillus sp. NRRL B-14911], gi\|89085557...	293.0	[0..39]	[672..13]
gi\|67155747, gi\|... - gi\|67155747\|ref\|ZP_00417374.1\| Alpha amylase, catalytic domain [Azotobacter vinelandii AvOP], gi\|670... gi\|67155747, gi\|... - gi\|67155747\|ref\|ZP_00417374.1\| Alpha amylase, catalytic domain [Azotobacter vinelandii AvOP], ref\|ZP...	290.0	[0..46]	[672..14]
gi\|77458760, gi\|... - gi\|77458760\|ref\|YP_348266.1\| Alpha amylase, catalytic region [Pseudomonas fluorescens Pf0-1], gi\|773...	288.0	[0..44]	[672..12]

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Predicted Domain #1

Region A:
Residues: [1-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQLMTIQA TASQTTALQA IVSKTMPSNL NTAEADTSLA QNSTEQTDSF KPVVYQIFTR  60
   61 LYGNKNPTNN PWGTISENGV GKFNDIDDSA LKSIKALGVT HVWYTGVPHH ALIADYSVIG 120
  121 VSSDDPDVVK GRAGSPYAVK DYYNVNPDLA INPAKRLQEF QALIERTHKQ GLKVIIDIVP 180
  181 NHVARNYHSV TKPQGVRDFG EDDIQTVEYA KHNNFYYVID NNQVHGFEVP DLPKSLKPLD 240
  241 GESHPLSNGQ FKEIPAKWTG NGSRLAKPDM NDWYETVKIN YGVRPDGSHD FPALPPRYAT 300
  301 LSAEQHYAFW QQHNHELPNS WIKFNQISQY WLAMGVDGFR YDMAEMVPVE FWSYLNSHIK 360
  361 HSYPDAFILA EVYNPALYSD YIQLGKMDYL YDKVDLYDTL KAIMAGQKST ELIAADQAKV 420
  421 QDIGSHMLHF LENHDEQRIA NAAFLGTLSG NASTDAVDPR YALPAMVVSA TLSTSPTLIY 480
  481 FGQEVGEAAT QNLGFGHASR TSIFDYAGVP AHQRWMNKGK FDGGQSTATE LALRAYYQKL 540
  541 LNLSTGKNAP ALLGQYYSLD AANRSARPST MDSHGSATGY DDSTFAFVRF EANSTNKMGQ 600
  601 KLIIVSNFSQ VQAKSLFLKL PKSLIEQWQL TDATYQLKDL LEDNAAQLIV KQGEGHIQVQ 660
  661 FAPLSSAIFE LAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.154902
Match:	1wzkA
Description:	Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) mutatnt D465N
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	3.1190602686215	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	2.98773241907716	bayes_pls_golite062009
catalytic activity	2.22613067995402	bayes_pls_golite062009
hydrolase activity	1.97740088175981	bayes_pls_golite062009
glucosidase activity	0.58717079348538	bayes_pls_golite062009
hexosaminidase activity	0.16438321606077	bayes_pls_golite062009
amylase activity	0.0914002140078796	bayes_pls_golite062009
alpha-amylase activity	0.0521244165288097	bayes_pls_golite062009
chitinase activity	0.0382131529139698	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: