YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|24347706, gi|...

General Information:
Name(s) found: gi|24373428 [NCBI NR]
gi|24347706 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24373428|ref|NP_717471.1| HU family DNA-binding protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347706|gb|AAN54915.1|AE015629_9 DNA-binding protein, HU family [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 91 amino acids

    Gene Ontology:
    Cellular Component: chromosome [ISSLink to PubMed article]
    Biological Process: DNA packaging [ISSLink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKAQLIQRI ATSLEQSQAS TKPVVEQILQ QIHIALSEGE KVFLPLFGTF ELRYHLPKSG  60
   61 RNPQTGEAIE IAGFNQPSFK AATALKQAIN E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 28.045757 HU protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA binding
    		•  5.25387001942839 bayes_pls_golite062009
  • nucleic acid binding
    		•  5.15205953864352 bayes_pls_golite062009
  • binding
    		•  3.99545980559645 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.74311685689448 bayes_pls_golite062009
  • transcription activator activity
    		•  0.38454381783388 bayes_pls_golite062009
  • protein binding
    		•  0.262917207132993 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.176747764275359 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle