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Protein Overview: gi|24373221, gi|...

General Information:
Name(s) found: gi|24373221 [NCBI NR]
gi|24347447 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373221|ref|NP_717264.1| dTDP-4-dehydrorhamnose reductase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347447|gb|AAN54708.1|AE015611_6 dTDP-4-dehydrorhamnose reductase [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 328 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: lipopolysaccharide biosynthetic process [ISSLink to PubMed article]
    Molecular Function: dTDP-4-dehydrorhamnose reductase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDVTPARPT VLLTGAHSQL AKALIRTHLN GGLVFNLHPL THAALDISDK YSVAEVFAQV  60
   61 KPDWVINCAA YNAVDKAETA VDEAYRVNSL GPELLATECA LTGARLVHIS SDYVFSGLLT 120
  121 GVEANALSET VTPSPLSVYG KSKLAGEQAV QRILGERAIV IRTAWLYGVD GHNFVKTMLR 180
  181 LMAATPDAQP LFVIDDQIGS PTWVDALASL IWQLMLRGES GLFHYAGQGQ CSWYEFAAEI 240
  241 QQQALALKLL KKAVPIIATD SLSYAAKALE KGNVLAQRPS YSALNSAKLR DTLGKDNLAA 300
  301 IQCPEVWQDW RVQLNCMLNA LITQSAKP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..328] PSI-BLAST 39.221849 Crystal structure of DTDP-4-dehydrorhamnose reductase, rfbD ortholog (CAC2315) from Clostridium acetobutylicum at 2.05 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • methionine adenosyltransferase regulator activity
    		•  5.88466784940665 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.9367410227151 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.868888700854563 bayes_pls_golite062009
  • DNA binding
    		•  0.790382977752475 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.613310508772122 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  0.418775403210681 bayes_pls_golite062009
  • binding
    		•  0.390159270709819 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.32207755075663 bayes_pls_golite062009
  • transcription factor activity
    		•  0.11102650759187 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.69

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle