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Protein Overview: gi|24373127, gi|...

General Information:
Name(s) found: gi|24373127 [NCBI NR]
gi|24347323 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373127|ref|NP_717170.1| outer membrane porin, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347323|gb|AAN54614.1|AE015601_8 outer membrane porin, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 321 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transport [ISSLink to PubMed article]
    Molecular Function: porin activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVFCKTLLA SALASATLAS AYAAEPLTVY GKLNVTAQSN DENGDATTTI QSNASRFGVK  60
   61 GDFELSSSLS AFYTVEYQVD TGAASSDNFT ARNQFVGLKG DFGSFSVGRN DTLLKISQGD 120
  121 VDQFNDLSGD LGKLFKGEVR AAQTATYLTP SFGDFVFGVT YVAEGNDVKS QFAQDGFSVA 180
  181 AMYGDAKLKK TAVYAALAYD SDVSGYEVLR ASLQAKLAGI KLGGMYQQQE QTYKLDKTTS 240
  241 LPVEVTAESA TGYLLSAAYD INAVTLKAQF QDMEDLGDSW SVGADYNLGK PTKVFAFYTN 300
  301 RSLEANTDDD KYIAIGLEHK F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..321] PSI-BLAST 46.69897 CRYSTAL STRUCTURES EXPLAIN FUNCTIONAL PROPERTIES OF TWO E. COLI PORINS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  1.92781696559954 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.980330358908048 bayes_pls_golite062009
  • binding
    		•  0.832620467756177 bayes_pls_golite062009
  • protein binding
    		•  0.074621060225547 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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