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Protein Overview: gi|24373032, gi|...

General Information:
Name(s) found: gi|24373032 [NCBI NR]
gi|24347201 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24373032|ref|NP_717074.1| type I restriction-modification system, M subunit, putative [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347201|gb|AAN54519.1|AE015590_1 type I restriction-modification system, M subunit, putative [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 684 amino acids

    Gene Ontology:
    Cellular Component: Type I site-specific deoxyribonuclease complex [ISSLink to PubMed article]
    Biological Process: DNA modification [ISSLink to PubMed article]
    Molecular Function: DNA-methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTDNDKKQQ EVLAIEDGMM LDYLTNNPIK ETPKELVRQK TLRALFHEYG LSAEDMALDF  60
   61 NTTVGGKRKK IDIAIFEHGA EHLSENIRRI VICDKEPIKG KKSAVKMRDH DQAQKDLQLM 120
  121 EDMMREQVGD KYVLEKCHWG LWTNGIEFFF VEKEESRFDT KFNAVGDWPL ADETLGSRDV 180
  181 ASNAQLRTAD REMLLTAFRR CHNFIHGNEG MPKDAAFWQF LYLIFSKMYD ERIGNRDREF 240
  241 WASPTEQFDD EGRKKIRARI NPLFEKVKKA YPEIFSGNEE IILSDRALAF MVSELAKYDF 300
  301 TRTEMDAKGA AYQEVVGDNL RGDRGQYFTP RGAIKLIVEM MAPQPHEKVL DPSCGTGGFL 360
  361 EQTLSFINRK LCEEEEVKLG AETTEEFISI QQQIKKFAEN NLFGCDFDPF LCRASQMNVV 420
  421 MASNAMANIY HMNSLEYPHG HLKGVEPAKS KIPVGDSSGK DGSIDVILTN PPFGSDIPVT 480
  481 DKQILEQYDL AYVWERTENG GFRKTERRKD AVSPEILFIE RCVQWLKQGG RMGIVLPDGI 540
  541 LGNPGDEYIR WWLMQECWVL GCVDLPVESF IVEANVNILT SLLFLKKKTD TEKDAIAFGG 600
  601 EPEYPVFMAV AEKVGFDRRG NTLYERHPDG EEKVIEEDVE ERIRINGQNV VRKLKRRSKI 660
  661 LDDDLPKIAK AWKEFRANNP EPSV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..177] MSA 7.314995 View MSA. No confident structure predictions are available.
    2 View Details [178..684] PSI-BLAST 55.69897 Crystal structure of Type I restriction enzyme EcoKI M protein (EC 2.1.1.72) (M.EcoKI)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • DNA-methyltransferase activity
    		•  7.61853880993981 bayes_pls_golite062009
  • site-specific DNA-methyltransferase (adenine-specific) activity
    		•  7.11249059771057 bayes_pls_golite062009
  • transferase activity
    		•  2.22303238506686 bayes_pls_golite062009
  • methyltransferase activity
    		•  1.75500643076741 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  1.71409699782588 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  1.67663666042395 bayes_pls_golite062009
  • catalytic activity
    		•  1.25333584501255 bayes_pls_golite062009
  • DNA (cytosine-5-)-methyltransferase activity
    		•  0.937171599492037 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.891400969900644 bayes_pls_golite062009
  • RNA methyltransferase activity
    		•  0.817509452491588 bayes_pls_golite062009
  • histone methyltransferase activity (H4-R3 specific)
    		•  0.647112128094373 bayes_pls_golite062009
  • protein-arginine omega-N symmetric methyltransferase activity
    		•  0.531263697103486 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.348134584790547 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  0.230719796976667 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle