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Protein Overview: gi|24372945, gi|...

General Information:
Name(s) found: gi|24372945 [NCBI NR]
gi|24347085 [NCBI NR]
Description(s) found:
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  • gi|24372945|ref|NP_716987.1| chorismate mutase/prephenate dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347085|gb|AAN54432.1|AE015580_7 chorismate mutase/prephenate dehydratase [Shewanella oneidensis MR-1] [NCBI NR]
  • chorismate mutase/prephenate dehydratase [Shewanella oneidensis MR-1]gi|24347085|gb|AAN54432.1| chorismate mutase/prephenate dehydratase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • chorismate mutase/prephenate dehydratase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 671 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: L-phenylalanine biosynthetic process [ISSLink to PubMed article]
    Molecular Function: chorismate mutase activity [ISSLink to PubMed article]
    prephenate dehydratase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKPQPLNHT REQITQLDND LLSLLAERRR LSLEVARSKE VDVRPIRDTQ REKELLARLV  60
   61 TAGREKGLDA HYVISLYQSI IEDSVLNQQA YLHGRANPET QKQQYCIAYL GARGSYSYLA 120
  121 ASRYCQRRQV EMLDLGCQSF DEIVQAVESG HADYGFLPIE NTSSGSINEV YDVLQHTSLS 180
  181 IVGETTIEVS HCLLGKPGSK LSEIKTVYAH PQPISQCSRY LSQHKALRLE YCSSSAEAME 240
  241 KVNQSPDNSA AAIGSAEGGA LYQLESIESG LANQKINQSR FIVVARKAVA VPEQLPAKTT 300
  301 LIMATGQKAG ALVEALLVLK AHQLNMSKLE SRPIPGTPWE EMFYLDIDAN ISSEAMQQGL 360
  361 KQLERITRFI KVLGCYPCET VTPTQLSNSQ LLIEPNTSKA EVLSEVSTKQ SPYRYSKAYK 420
  421 AQASEIHCGP FTIGAGHIGA IAKVTLSKSL LHLESSHAAA HIALSAFEHK IKQLKEVGFQ 480
  481 AVILEGCQQL ASKEAIIPKL RQTLHQYDLL CVIAIEQAAD MPLATEHADM LFLTGKQMFN 540
  541 QALLTQAGTL PIPLFLERND MASYEEFLAA TETILSQGNQ QLILCDSGIR TYNNANLPTL 600
  601 DLASLILIKA NSHLPIVINP CYAINEDALV LQTQGIKQLK ADGIVLNYAL EEDKAHHSLA 660
  661 LMGEVVRELY R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] PSI-BLAST 20.69897 Chorismate mutase domain of P-protein
    2 View Details [102..338] PSI-BLAST 78.09691 No description for 2qmxA was found.
    3 View Details [339..671] PSI-BLAST 74.522879 Crystal structure of Phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase) (TM0343) from Thermotoga Maritima at 1.92 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chorismate mutase activity
    		•  3.78733095924257 bayes_pls_golite062009
  • catalytic activity
    		•  1.09506175640279 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • 3-deoxy-7-phosphoheptulonate synthase activity
    		•  2.72022882819661 bayes_pls_golite062009
  • catalytic activity
    		•  2.67031204377352 bayes_pls_golite062009
  • lyase activity
    		•  0.740424046054758 bayes_pls_golite062009
  • transferase activity, transferring aldehyde or ketonic groups
    		•  0.719960432098845 bayes_pls_golite062009
  • oxo-acid-lyase activity
    		•  0.606352769346285 bayes_pls_golite062009
  • transferase activity
    		•  0.464721888799972 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.36754360512349 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle