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Protein Overview: TRMD_SHEON

General Information:
Name(s) found: TRMD_SHEON [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • tRNA (guanine-N(1)-)-methyltransferase OS=Shewanella oneidensis (strain MR-1) GN=trmD PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 248 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA modification [ISSLink to PubMed article]
    Molecular Function: tRNA (guanine-N1-)-methyltransferase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLGVITLFP EMFRAVTDFG VTGRAVKNGL LELHTWNPRD FTHDRHSTVD DRPYGGGPGM  60
   61 LMMVQPLRDA IHAARAAAGE DAKVIYLSPQ GRKLDQQGVT ELAKSSRLIL VCGRYEGIDE 120
  121 RIIQTEVDEE WSVGDYVLSG GELPAMTMID AVSRLVPGVL GKQASAEQDS FSDGLLDCPH 180
  181 YTRPESLDGL DVPAVLLSGN HEQIRLWRLQ QSLGRTLLRR PELLQNLALT DEQSTLLAQF 240
  241 VEAMDKNA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..248] PSI-BLAST 119.0 tRNA(m1G37)-methyltransferase TrmD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA methyltransferase activity
    		•  4.77771076540343 bayes_pls_golite062009
  • methyltransferase activity
    		•  4.0901595540349 bayes_pls_golite062009
  • transferase activity, transferring one-carbon groups
    		•  4.01958090893547 bayes_pls_golite062009
  • tRNA methyltransferase activity
    		•  3.35439517507384 bayes_pls_golite062009
  • tRNA (guanine) methyltransferase activity
    		•  3.10060782124076 bayes_pls_golite062009
  • tRNA (guanine-N1-)-methyltransferase activity
    		•  2.87460031907348 bayes_pls_golite062009
  • S-adenosylmethionine-dependent methyltransferase activity
    		•  2.59156540645412 bayes_pls_golite062009
  • rRNA methyltransferase activity
    		•  1.86192852581774 bayes_pls_golite062009
  • transferase activity
    		•  1.84002196534744 bayes_pls_golite062009
  • catalytic activity
    		•  1.16774040077235 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.0655574594365502 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle