YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RNC_SHEON

General Information:
Name(s) found: RNC_SHEON [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
SHOW ALL
  • Ribonuclease 3 OS=Shewanella oneidensis (strain MR-1) GN=rnc PE=3 SV=1 [Swiss-Prot]
    • Organism: Shewanella oneidensis MR-1
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA processing [ISSLink to PubMed article]
    Molecular Function: ribonuclease III activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPIKNLPRL CRTLGYEFKN LDLLTQALTH RSAANKHNER LEFLGDSILS IVISDALYHQ  60
   61 FPKATEGDLS RMRATLVRGD TLTLIAQAFK LGDYLFLGPG ELKSGGFRRE SILADAVEAI 120
  121 IGAIYLDSDL EVCRQLLLNW YAERLAEIQP GINQKDAKTL LQEYLQGLKK PLPDYQVINI 180
  181 EGDAHDQTFT VECRIDDLSQ SVIGVASSRR KAEQIAAAQV LELLKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 55.154902 RNase III endonuclease catalytic domain; RNase III, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  2.103878681691 bayes_pls_golite062009
  • endoribonuclease activity
    		•  2.02847548000256 bayes_pls_golite062009
  • endonuclease activity
    		•  1.52328576888271 bayes_pls_golite062009
  • binding
    		•  1.36306903445995 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.33734225890407 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  0.80785216315429 bayes_pls_golite062009
  • catalytic activity
    		•  0.328884095744829 bayes_pls_golite062009
  • protein binding
    		•  0.018276859224266 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle