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Protein Overview: gi|24372864, gi|...

General Information:
Name(s) found: gi|24372864 [NCBI NR]
gi|24346976 [NCBI NR]
Description(s) found:
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  • gi|24372864|ref|NP_716906.1| RNA polymerase sigma-70 factor [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346976|gb|AAN54351.1|AE015572_6 RNA polymerase sigma-70 factor [Shewanella oneidensis MR-1] [NCBI NR]
  • RNA polymerase sigma-70 factor [Shewanella oneidensis MR-1]gi|24346976|gb|AAN54351.1| RNA polymerase sigma-70 factor [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • RNA polymerase sigma-70 factor [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 616 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription initiation [ISSLink to PubMed article]
    Molecular Function: sigma factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHTPQSQLK LLLAKGKEQG YLTYAEVNDH LPADMVDSDQ IEDIIQMIND MGIRVFEEAP  60
   61 DADDMMMSED NTDEDAAEEA AAALATVESE LGRTTDPVRM YMREMGTVEL LTREGEIVIA 120
  121 KRIEEGINTV QSSVAEYPQA IAMILEQYDQ YEADELRLSD IISGFVNPDE EDLGPTATHI 180
  181 GSELSEEDLE DEDDEEDDED EDGDGDGDDD GNKGPDPEEA RERFSQLRTA YESALKIIDA 240
  241 KGREHPESIQ ALFEIGEIFK EFRLVPKQFD RLVKSMRSMM DRVRVQERLL MKLCVEQAKM 300
  301 PKKNFVKFFT GNETNLDWFE AEKTSNKPYA EGLRMVEEDV QRCRSKLAAI EEETGLVIAA 360
  361 IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD 420
  421 KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE 480
  481 PSPEELAERM MMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATS 540
  541 ESLKSATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK 600
  601 LRHPSRSEIL KSFLDE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] FFAS03 2.89 DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits
    2 View Details [109..278] PSI-BLAST 59.09691 CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE
    3 View Details [279..616] PSI-BLAST 62.0 Sigma70


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle