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Protein Overview: gi|24372856, gi|...

General Information:
Name(s) found: gi|24372856 [NCBI NR]
gi|24346964 [NCBI NR]
Description(s) found:
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  • gi|24372856|ref|NP_716898.1| succinate-semialdehyde dehydrogenase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346964|gb|AAN54343.1|AE015571_6 succinate-semialdehyde dehydrogenase [Shewanella oneidensis MR-1] [NCBI NR]
  • succinate-semialdehyde dehydrogenase [Shewanella oneidensis MR-1]gi|24346964|gb|AAN54343.1| succinate-semialdehyde dehydrogenase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • succinate-semialdehyde dehydrogenase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 482 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: gamma-aminobutyric acid catabolic process [ISSLink to PubMed article]
    Molecular Function: succinate-semialdehyde dehydrogenase [NAD(P)+] activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNDPSLLR QQCYINGQWC DANSKETVAI TNPATGAVIA CVPVMGQAET QAAIAAAEAA  60
   61 LPAWRALTAK ERGAKLRRWF ELLNENSDDL ALLMTSEQGK PLTEAKGEVT YAASFIEWFA 120
  121 EEAKRIYGDT IPGHQGDKRI MVIKQPVGVT AAITPWNFPA AMITRKAAPA LAAGCTMVVK 180
  181 PAPQTPFTAL ALAVLAERAG IPAGVFSVIT GDAIAIGNEM CTNPIVRKLS FTGSTNVGIK 240
  241 LMAQCAPTLK KLSLELGGNA PFIVFDDANI DAAVEGAMIA KYRNAGQTCV CANRIYVQAG 300
  301 VYDEFAEKLS MAVAKLKVGE GIIAGVTTGP LINAAAVEKV QSHLEDAIKK GATVLAGGKV 360
  361 HELGGNFFEP TVLTNADKSM RVAREETFGP LAPLFKFNDV DDVIKQANDT EFGLAAYFYG 420
  421 RDISLVWKVA ESLEYGMVGV NTGLISTEVA PFGGMKSSGL GREGSKYGIE EYLEIKYICM 480
  481 SV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..482] PSI-BLAST 1000.0 Aldehyde reductase (dehydrogenase), ALDH

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  5.09598561374689 bayes_pls_golite062009
  • oxidoreductase activity
    		•  4.47226217021998 bayes_pls_golite062009
  • malonate-semialdehyde dehydrogenase (acetylating) activity
    		•  4.2273960318884 bayes_pls_golite062009
  • methylmalonate-semialdehyde dehydrogenase (acylating) activity
    		•  3.87605237828483 bayes_pls_golite062009
  • succinate-semialdehyde dehydrogenase [NAD(P)+] activity
    		•  3.64672165191647 bayes_pls_golite062009
  • 1-pyrroline-5-carboxylate dehydrogenase activity
    		•  3.49281413016612 bayes_pls_golite062009
  • 3-chloroallyl aldehyde dehydrogenase activity
    		•  3.37049090049734 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  3.2867555127991 bayes_pls_golite062009
  • benzaldehyde dehydrogenase activity
    		•  2.99564252244797 bayes_pls_golite062009
  • aldehyde dehydrogenase (NAD) activity
    		•  2.81851373615334 bayes_pls_golite062009
  • catalytic activity
    		•  2.80804701752928 bayes_pls_golite062009
  • succinate-semialdehyde dehydrogenase activity
    		•  2.71501590413507 bayes_pls_golite062009
  • aldehyde dehydrogenase [NAD(P)+] activity
    		•  2.43250909158896 bayes_pls_golite062009
  • aminobutyraldehyde dehydrogenase activity
    		•  2.35958138496479 bayes_pls_golite062009
  • acyl-CoA binding
    		•  2.26220696569489 bayes_pls_golite062009
  • retinal dehydrogenase activity
    		•  1.42867174920845 bayes_pls_golite062009
  • binding
    		•  1.06673666884196 bayes_pls_golite062009
  • retinoid binding
    		•  0.983782635681687 bayes_pls_golite062009
  • isoprenoid binding
    		•  0.900374761028287 bayes_pls_golite062009
  • protein binding
    		•  0.894945263794726 bayes_pls_golite062009
  • glutamate-5-semialdehyde dehydrogenase activity
    		•  0.882678635212924 bayes_pls_golite062009
  • histidinol dehydrogenase activity
    		•  0.258030369394064 bayes_pls_golite062009
  • benzaldehyde dehydrogenase (NAD+) activity
    		•  0.23487570676521 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle