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Protein Overview: TYPH_SHEON

General Information:
Name(s) found: TYPH_SHEON [Swiss-Prot]
Description(s) found:
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  • gi|24372799|ref|NP_716841.1| thymidine phosphorylase [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346890|gb|AAN54286.1|AE015566_1 thymidine phosphorylase [Shewanella oneidensis MR-1] [NCBI NR]
  • Thymidine phosphorylase OS=Shewanella oneidensis (strain MR-1) GN=deoA PE=3 SV=1 [Swiss-Prot]
  • thymidine phosphorylase [Shewanella oneidensis MR-1]gi|24346890|gb|AAN54286.1| thymidine phosphorylase [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • thymidine phosphorylase [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 443 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process [ISSLink to PubMed article]
    Molecular Function: thymidine phosphorylase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLAQEIIRK KRNGLVLSAE EIQFFVKGIT TNAVSEGQIA ALGMAVYFND MNMDERIALT  60
   61 TAMRDSGTVL NWQSLNLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT 120
  121 GGTLDKFDAI PGYQTEPSSE LFRKVVKDVG VAIIGQTGDL VPADKRFYSI RDNTATVESI 180
  181 SLITASILSK KLACSLDALA MDVKVGSGAF MPTYEASEEL ARSIAAVANG AGTKTTALLT 240
  241 DMNQVLASCA GNALEVKEAI DFLTGAYRNP RLYAVTMGLC AEMLLLGGLA TDEADARAKL 300
  301 NRVLDNGRAA EIFGKMVSGL GGPVDFVENY SKYLPQSQII RPVFADTQGY AHSMDTRELG 360
  361 LAVVTLGGGR RKPGDELDYS VGLTQVCALG DKIDASTPIA VIHAQSEEAF AQAEDAVKKA 420
  421 IHIDEIAPEK TPEIYAYIRA TDL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..443] PSI-BLAST 128.0 Thymidine phosphorylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring pentosyl groups
    		•  2.4903133160045 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  2.43457627723298 bayes_pls_golite062009
  • catalytic activity
    		•  1.99182579317454 bayes_pls_golite062009
  • transferase activity
    		•  1.94624792134779 bayes_pls_golite062009
  • binding
    		•  1.22159759850364 bayes_pls_golite062009
  • protein binding
    		•  0.355523160607983 bayes_pls_golite062009
  • anthranilate phosphoribosyltransferase activity
    		•  0.28144891326436 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle